From: Detecting amino acid preference shifts with codon-level mutation-selection mixture models
Site | PIP (MutSelC60) | PIP (MutSelBC) | Finkelstein | Tamuri | Avian | Human |
---|---|---|---|---|---|---|
44 | 0.0582 | 0.2155 | 0.966 | YES | A((S)) | S((L))((A)) |
64 | 0.148 | 0.0170 | 0.954 | Â | M(I)((T)) | T((M))((I)) |
76 | 0.00346 | 0 | Â | Â | T((M))((K))((I))((A)) | T |
81 | 0.0165 | 0 | Â | Â | T((I))((A)) | M(V)((T))((I)) |
102 | 0.166 | 0.0000160 | Â | Â | N((S))((K)) | N |
105 | 0.00535 | 0 | Â | YES | T((A)) | V(M)((T))((L))((I)) |
106 | 0.0184 | 1 | Â | Â | T((A)) | T(A) |
107 | 0.0116 | 0.00637 | Â | Â | S((N))((G)) | S(N) |
109 | 0.272 | 0.0005 | Â | Â | V((I)) | V(I) |
122 | 0.0708 | 0.00608 | Â | Â | V((M))((I))((A)) | V((I))((F)) |
199 | 0.0278 | 1 | 0.997 | YES | A* | S |
249 | 0.445 | 0 | Â | Â | E* | E |
271 | 0.0154 | 0.974 | 0.958 | Â | T((I))((A)) | A((T)) |
292 | 0.0127 | 0.0265 | Â | Â | I(V)((T))((M)) | T((I)) |
338 | 0.0124 | 0 | Â | Â | V((I))((A)) | V(I) |
377 | 0.00150 | 0.0655 | Â | Â | A* | A((V))((T))((E)) |
471 | 0.00383 | 0.0845 | Â | Â | T((I))((A)) | T((P))((I))((A)) |
475 | 0.69 | 1 | 0.994 | YES | L* | M |
493 | 0.00257 | 0.91 | Â | YES | R* | R((K))((G)) |
522 | 0.0516 | 0.008 | Â | Â | Q* | Q((H)) |
524 | 0.168 | 0.00547 | Â | Â | T((M))((I)) | T((I)) |
559 | 0.00799 | 0.26 | Â | Â | T((M))((I))((A)) | T(A)((S))((N))((I)) |
567 | 0.0852 | 0.216 | 0.977 | Â | D((N))((E)) | N((D)) |
569 | 0.175 | 1 | Â | YES | T* | T(A)((S)) |
588 | 0.00283 | 0.00609 | 0.971 | Â | A((V))((T)) | I((V))((A)) |
591 | 0.265 | 0.001 | Â | Â | Q((L)) | Q |
613 | 0.0776 | 0.115 | Â | YES | V((A)) | T((V))((I))((A)) |
627 | 0.0111 | 0 | 0.977 | YES | E((K)) | K((R)) |
661 | 0.00126 | 0.967 | Â | YES | A((V))((T)) | T((V))((A)) |
674 | 0.00644 | 0.0555 | 0.969 | Â | A((S)) | T((P))((I))((A)) |
676 | 0.0165 | 0.242 | Â | Â | T((I))((A)) | I(T) |
682 | 0.372 | 0 | Â | YES | G* | G(S)((N)) |
684 | 0.0596 | 0.999 | Â | YES | A((T)) | S(A) |
702 | 0.552 | 1 | 0.955 | YES | K((R)) | R((K)) |
711 | 0.17 | 0 | Â | Â | N((S)) | N |
715 | 0.0916 | 0.00584 | Â | Â | N((S)) | N((T)) |
740 | 0.00239 | 0 | Â | YES | D* | D((N)) |
754 | 0.0125 | 0.0335 | Â | Â | I* | I((S))((F)) |