Table 3 Partitioning strategy selecting using Bayes factors (Harmonic-Mean) in Bayesian analyses
Dataset partitioning models | Harmonic-mean (LnL) | Bayes factor |
|---|---|---|
Alignments without Gblocks | ||
M1: mtDNA, nucDNA (2 partitions, 19 free parameters) | −38664.20 | M2, M1 = 907.0 |
M2: mtDNA, Wg, EF-1α, Bub3, RpS4, RpL27a (6 partitions, 59 parameters) | −38118.57 | M3, M1 = 1909.5 |
M3: mtDNA 1&2, mtDNA 3, Wg, EF-1α, Bub3, RpS4, RpL27a (7 partitions, 69 parameters) | −37594.33 | M3, M2 = 1002.4 |
M4: mtDNA 1&2, mtDNA 3, Wg 1&2, Wg 3, EF-1α 1&2, EF-1α 3, Bub3, RpS4, RpL27a (9 partitions, 89 parameters) | −37261.28 | M4, M1 = 2483.5 |
M4, M2 = 1576.43 | ||
M4, M3 = 574 | ||
Alignments with Gblocks default | Harmonic Mean (LnL) | Bayes factor |
M1: mtDNA, nucDNA (2 partitions, 19 free parameters) | −27676.75 | M2, M1 = 150.1 |
M2: mtDNA, Wg, EF-1α, Bub3, RpS4, RpL27a (6 partitions, 59 parameters) | −27509.59 | M3, M1 = 1210.5 |
M3: mtDNA 1&2, mtDNA 3, Wg, EF-1α, Bub3, RpS4, RpL27a (7 partitions, 69 parameters) | −26956.35 | M3, M2 = 1060.4 |
M4: mtDNA 1&2, mtDNA 3, Wg 1&2, Wg 3, EF-1α 1&2, EF-1α 3, Bub3, RpS4, RpL27a (9 partitions, 89 parameters) | −26691.65 | M4, M1 = 1647.8 |
M4, M2 = 1497.73 | ||
M4, M3 = 437.3 | ||