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Table 9 Stepwise context reduction for the nuclear SSU rRNA dataset using the extended likelihood-based approach.

From: Efficient context-dependent model building based on clustering posterior distributions for non-coding sequences

Model Contexts Annealing Melting log BF
GTR16C 16 (96) [-21.25; -15.74] [-19.29; -14.31] -17.65
GTR15C 15 (90) [-17.17; -13.45] [-14.19; -10.30] -13.78
GTR14C 14 (84) [-14.05; -10.21] [-10.09; -5.13] -9.87
GTR13C 13 (78) [-9.48; -6.19] [-7.70; -3.72] -6.77
GTR12C 12 (72) [-6.99; -3.70] [-3.84; -0.05] -3.62
GTR11C 11 (66) [-0.60; 2.92] [2.97; 7.62] 3.23
GTR10C 10 (60) [4.85; 8.77] [6.62; 11.95] 8.05
GTR9C 9 (54) [9.05; 12.46] [8.55; 13.02] 10.77
GTR8C 8 (48) [8.07; 11.26] [8.68; 12.44] 10.11
GTR7C 7 (42) [15.82; 19.60] [15.09; 21.19] 17.93
GTR6C 6 (36) [13.75; 16.89] [21.71; 26.13] 19.62
GTR5C 5 (30) [15.87; 18.89] [17.86; 22.19] 18.70
GTR4C 4 (24) [14.10; 17.69] [14.30; 18.90] 16.25
GTR3C 3 (18) [11.20; 14.99] [15.22; 18.24] 14.91
GTR2C 2 (12) [8.37; 11.57] [13.14; 17.04] 12.53
GTR 1 (6) - - 0
  1. The stepwise context reduction using the extended likelihood-based clustering approach reveals the same optimal model with six clusters as the simple likelihood-based clustering approach for the nuclear SSU rRNA dataset.