Skip to main content

Table 3 Characteristics of the 16 SSRs and 8 RFLP loci from the total sample (N = 107) and the wild sample (N = 61).

From: Current genetic differentiation of Coffea canephoraPierre ex A. Froehn in the Guineo-Congolian African zone: cumulative impact of ancient climatic changes and recent human activities

SSR

         
 

Map location

Total sample

N = 107

Wild sample

N = 61

Locus

LG1

N a

H O

H E

PIC

N a

H O

H E

PIC

M257

B

6

0.25

0.55

0.47

6

0.21

0.59

0.52

M809

H

5

0.15

0.25

0.23

4

0.11

0.16

0.15

M804

M

3

0.06

0.07

0.07

1

0.00

0.00

0.00

M821

F

13

0.28

0.83

0.81

13

0.28

0.83

0.81

M314

G

5

0.25

0.49

0.43

5

0.18

0.42

0.36

M368

-

20

0.81

0.93

0.92

15

0.76

0.91

0.91

M764

-

13

0.65

0.83

0.81

11

0.63

0.82

0.80

M394

C

9

0.41

0.80

0.77

8

0.39

0.75

0.71

M779

-

12

0.75

0.85

0.83

12

0.63

0.82

0.80

M782

-

4

0.06

0.25

0.22

4

0.03

0.12

0.11

M495

-

9

0.35

0.65

0.60

9

0.33

0.62

0.57

M259

N

6

0.52

0.59

0.55

6

0.48

0.60

0.56

M367

-

15

0.30

0.88

0.87

12

0.20

0.85

0.83

M755

-

13

0.42

0.78

0.76

11

0.23

0.68

0.65

M387

J

10

0.33

0.75

0.71

8

0.26

0.74

0.70

M856

I

11

0.49

0.88

0.87

11

0.41

0.85

0.84

Total

 

154

   

136

   

Mean

 

9.63

0.38

0.65

0.62

8.5

0.32

0.61

0.58

RFLP

         
  

N = 107

N = 61

Locus

LG2

N a

H O

H E

PIC

N a

H O

H E

PIC

gA13

10

14

0.51

0.73

0.70

11

0.43

0.66

0.61

gA19

9

10

0.43

0.78

0.75

9

0.38

0.72

0.68

gA29

5

5

0.27

0.47

0.44

5

0.26

0.50

0.47

gA10

3

8

0.48

0.78

0.76

7

0.42

0.77

0.74

gA14

3

5

0.30

0.59

0.53

5

0.31

0.56

0.52

gA61

7

8

0.50

0.70

0.66

6

0.48

0.69

0.65

cR167

4

7

0.43

0.60

0.57

7

0.34

0.58

0.55

gA72

7

2

0.16

0.41

0.33

2

0.13

0.34

0.28

Total

 

59

   

52

   

Mean

 

7.37

0.38

0.63

0.59

6.50

0.34

0.60

0.56

  1. Linkage group locations for mapped markers are given. The number of alleles (Na), observed heterozygosity (HO), expected heterozygosity (HE, or gene diversity) and PIC (polymorphism information content) values are also given.
  2. 1 Linkage group of (C. canephora × C. heterocalyx) × C. canephora genetic map from Coulibaly et al. [60]
  3. 2 Linkage group of C. canephora genetic map from Paillard et al. [59], with estimated distances: gA10-gA14 = 21 cM, gA61-gA72 = 30 cM
Back to article page

BMC Ecology and Evolution

ISSN: 2730-7182

Contact us