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Table 4 Results of Shimodaira-Hasegawa ML test (RAxML) for comparisons of alternative tree topologies to the best ML tree (Figure 2 ) based on all nucleotide data (11,784 characters) and partitioned (by gene) analysis

From: Comparative analysis of complete mitochondrial genome sequences confirms independent origins of plant-parasitic nematodes

Phylogenetic hypothesis

Difference in -lnL

S.D.

P value significant (0.01)

Constrained monophyly

   

1. Tylenchomorpha

93

30

yes

2. Tylenchoidea + Diplogasteromorpha

216

27

yes

3. Aphelenchoididae + Diplogasteromorpha

105

26

yes

4. Oxyuridomorpha + Tylenchoidea

54

15

yes

  1. Alternative topologies tested are provided in Additional file 5.