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Table 1 Parameter estimates, log-likelihood scores, and likelihood ratio test (LRT) P values obtained from Branch-site analyses of the RH2a data set

From: Complex patterns of divergence among green-sensitive (RH2a) African cichlid opsins revealed by Clade model analyses

Model (n.p.) Site class 0 Site class 1 Site class 2 κ lnL LRT Pvalue
  ω0 p 0 ω1 p 1 ω2 p 2    
BrS-A α (37) 0.0235 0.8241 1 0.1759 1.0000 0.0000 1.7670 −3789.9781 1.0000
BrS-N α (36) 0.0235 0.8241 1 0.1759 1 0.0000 1.7670 −3789.9781  
BrS-A β (37) 0.0230 0.6151 1 0.1296 1.0000 0.2553 1.7652 −3789.1087 1.0000
BrS-N β (36) 0.0230 0.6151 1 0.1296 1 0.2553 1.7652 −3789.1087  
BrS-A αβ (37) 0.0234 0.8205 1 0.1746 2.8146 0.0049 1.7670 −3789.9535 0.8643
BrS-N αβ (36) 0.0235 0.8182 1 0.1743 1 0.0076 1.7669 −3789.9681  
BrS-A αβ reduced (27) 0.0000 0.7487 1 0.2514 1.0000 0.0000 2.2643 −2200.6106 1.0000
BrS-N αβ reduced (26) 0.0000 0.7487 1 0.2514 1 0.0000 2.2643 −2200.6106  
  1. NOTE—n.p number of parameters.