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Fig. 5 | BMC Evolutionary Biology

Fig. 5

From: Phylogenomics of a putatively convergent novelty: did hypertrophied lips evolve once or repeatedly in Lake Malawi cichlid fishes?

Fig. 5

Quartet inferred species tree. To account for incomplete lineage sorting, we reconstructed the species tree of the Malawi cichlids sampled using the one SNP per locus data matrix analyzed in SVDquartets. The phylogeny inferred using the complete data matrix is shown, and bootstrap replicates of the data were used to generate the support values shown behind each node recovered in the original data matrix tree. All individuals sampled from a species were used in the coalescent model. This allowed these individuals to inform the species tree reconstruction, but in the above diagram they are collapsed into their respective species. Few of the nodes exhibit substantial bootstrap support. The species exhibiting hypertrophied lips are again highlighted with a red bar to the right of the species names

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