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Table 1 Basic assembly statistics (> 300 bp) compared to existing small-spotted catshark transcriptomes

From: Phylotranscriptomics suggests the jawed vertebrate ancestor could generate diverse helper and regulatory T cell subsets

 

KEA

MEA

RAW

MCF

HTMCF

Total base count

45,214,552

110,464,397

275,457,098

275,410,367

80,066,015

Total contig count

58,273

86,006

388,800

387,579

102,228

N50a contig length

965

2316

786

791

969

L50b contig count

12,721

13,518

89,641

88,973

20,814

GC content (%)

45.69

43.9

42.09

42.1

42.03

  1. aN50: the length of the shortest contig included when the least number of contigs are used to make up 50% of the total assembly length
  2. bL50: the total contig count when the least number of contigs are used to make up 50% of the total assembly length