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Table 4 Alignment based pattern analysis of CBM49 in putative and characterized class C GH9 endoglucanases

From: Origin, evolution, and divergence of plant class C GH9 endoglucanases

 

Motif

Fs

Sm

Rm

1

GPIWGLTK[AS]G[DN]SY[GTV]FP[EST][HW][IL][NS][ST]L[APS][AV]GKS[LM]EFVYIH[AS][AT]S

140.4529

5

2.47E-35

2

GPIWGL[ST][KR]SG[DN]S[FY][AGT][FL]P[EST][HW][ILM]x[ST]Lx[AS]GKSLEFVYIH[AS][AT][ST]

131.0036

10

3.02E-32

3

GPIWGL[NST]x(2)[GP][DENQ]x(2)[AGTV]

75.6634

15

7.32E-04

4

GPIWGL[ST]x(2)[GP][DEN]x(2)[AGTV]x[PV]x(4)[STV]x(3)[GQ]x[GS]xE[FV][NV][FY][IV][HY][ASTV][AQT][GPST]

35.2349

20

5.86E-16

5

GPIWG[LV][NST]x[AST][GP][DENQT]x(2)[AGSTV]

36.2141

25

4.10E-04

6

GPIWG[LV][ANST]x(2)[GP][DENQT]x(2)[AGSTV]

33.2127

30

2.92E-03

7

GPI[WY]G[LV][ANST]x(3)[DENQT]x(2)[ADGSTV]

28.9138

35

1.00E-01

8

GP[IL]WGL[ANST]x(3)[ADEGNQ]

28.034

40

0.16

9

GP[IL]WG[LV][NST]x(3)[DENQT]

27.6347

45

0.14

10

GP[IL]WG[LV][AENST]x(3)[ADEGNQT]

26.4888

50

0.39

11

GP[IL][WY]G[LV][AENST]x(3)[ADEGNQT]

25.6627

55

1.4

12

GP[ILV][WY]G[LV][AENST]

23.5981

61

4.9

13

GP[ILV]xG[LV]

18.3557

65

356

14

G[NPS][IL][WY]G[LV][ANST]

22.9977

70

9.2

15

G[NPS][ILV]WG[LV]

20.977

77

15

16

G[NPS][ILV][WY]G[LV]

20.1508

80

53

17

G[DNPQS][ILV][WY]G[LV]

19.4127

85

83

18

G[DENPQST]x(2)G[LV]

12.9137

90

12,445

19

Gx[ILV][WY]G[LV]

17.5296

98

323

20

Gx(3)G[LV]

11.5238

100

33,184

  1. Abbreviations: Fs Fitness score, E Glutamic acid, Sm Number of sequences matched, Q Glutamine, Rm Estimated number of random matches, S Serine, A Alanine, T Threonine, L Leucine, C Cysteine, M Methionine, Y Tyrosine, I Isoleucine, F Phenylalanine, V Valine, W Tryptophan, G Glycine, K Lysine, D Aspartic acid, H Histidine, N Asparagine, P Proline, R Arginine, x Any amino acid