From: The prevalence of terraced treescapes in analyses of phylogenetic data sets
Taxon | Number of taxa | Taxon coverage density | Number of loci | Model | Number of parameters | Log likelihood | AIC | AIC [EL] – AIC [EUL]# | Terrace size |
---|---|---|---|---|---|---|---|---|---|
Insects | 144 | 0.95 | 472^ | EL | 757 | −30,914,676 | 61,830,867 | 417,292 | 1 |
EUL | 134,992 | −30,571,795 | 61,413,574 | ||||||
Caryophyllales.2 | 95 | 0.92 | 1120^^ | EL | 1307 | −20,001,090 | 40,004,795 | 184,811 | 1 |
EUL | 210,560 | −19,699,432 | 39,819,984 | ||||||
1000 Plants.2 | 102 | 0.91 | 620 | EL | 5781 | −8,873,326 | 17,758,215 | 136,442 | 1 |
EUL | 130,200 | −8,680,687 | 17,621,773 | ||||||
1000 Plants.1 | 102 | 0.97 | 8 | EL | 273 | −8,881,093 | 17,762,731 | 43,552 | 1 |
EUL | 1680 | −8,857,910 | 17,719,179 | ||||||
Caryophyllales.1 | 95 | 0.98 | 209 | EL | 396 | −3,490,762 | 6,982,316 | 30,510 | 1 |
EUL | 39,292 | −3,436,611 | 6,951,806 | ||||||
Mammals | 169 | 0.94 | 26 | EL | 569 | −1,227,939 | 2,457,016 | 18,145 | 1 |
EUL | 8944 | −1,210,492 | 2,438,871 | ||||||
Chameleons | 202 | 0.92 | 6 | EL | 455 | − 188,780 | 378,471 | 4565 | 1 |
EUL | 2460 | −184,493 | 373,906 | ||||||
Scincid lizards | 213 | 0.78 | 6 | EL | 477 | −129,669 | 260,291 | 1410 | 3 |
EUL | 2592 | − 126,849 | 258,881 | ||||||
Euphorbia* | 131 | 0.28 | 7 | EL | 322 | −46,304 | 93,252 | 435 | 759 |
EUL | 1876 | −44,533 | 92,817 | ||||||
Iris* | 137 | 0.33 | 6 | EL | 311 | −29,602 | 59,827 | −46 | 1 |
EUL | 1596 | −28,340 | 59,872 | ||||||
Allium* | 57 | 0.24 | 6 | EL | 155 | −15,288 | 30,886 | − 217 | 973,215 |
EUL | 660 | −14,891 | 31,102 | ||||||
Primula* | 185 | 0.43 | 6 | EL | 421 | −43,494 | 87,831 | − 801 | 466 |
EUL | 2256 | −42,060 | 88,631 | ||||||
Ficus* | 112 | 0.36 | 5 | EL | 264 | −14,185 | 28,897 | − 963 | 851,445 |
EUL | 1140 | −13,790 | 29,860 | ||||||
Syzygium* | 106 | 0.35 | 5 | EL | 254 | −14,557 | 29,622 | − 1085 | 45 |
EUL | 1090 | −14,264 | 30,707 | ||||||
Solanum* | 187 | 0.31 | 7 | EL | 434 | −39,049 | 78,967 | − 1410 | 211.9 million |
EUL | 2660 | −37,528 | 80,376 | ||||||
Caryophyllaceae* | 225 | 0.29 | 7 | EL | 498 | −67,977 | 136,951 | − 1619 | 718.3 billion |
EUL | 3108 | −66,177 | 138,570 | ||||||
Asplenium* | 133 | 0.21 | 6 | EL | 317 | −29,688 | 60,010 | − 1758 | 8269 |
EUL | 1632 | −29,252 | 61,768 | ||||||
Eucalyptus* | 136 | 0.23 | 6 | EL | 309 | −14,683 | 29,984 | − 1832 | 27 |
EUL | 1584 | −14,324 | 31,816 | ||||||
Ranunculus* | 170 | 0.31 | 7 | EL | 400 | −32,738 | 66,276 | − 1986 | 1 |
EUL | 2422 | −31,709 | 68,262 | ||||||
Rhododendron* | 117 | 0.35 | 7 | EL | 294 | −22,049 | 44,687 | − 2025 | 1034 |
EUL | 1680 | −21,676 | 46,712 | ||||||
Rosaceae* | 529 | 0.30 | 7 | EL | 1118 | −83,932 | 170,101 | − 6350 | 1.72E + 23 |
EUL | 7448 | −80,777 | 176,451 | ||||||
Lichenized fungi | 1317 | 0.44 | 9 | EL | 2712 | − 499,157 | 1,003,737 | − 8260 | 11,655 |
EUL | 23,760 | − 482,238 | 1,011,997 | ||||||
Primates | 372 | 0.37 | 79 | EL | 1452 | −648,012 | 1,298,927 | −41,745 | 70.8 million |
EUL | 59,250 | −611,086 | 1,340,672 | ||||||
Bats | 815 | 0.15 | 29 | EL | 1888 | − 589,602 | 1,182,979 | −51,491 | 1.43E + 41 |
EUL | 47,444 | −569,791 | 1,234,470 | ||||||
Saxifragales | 946 | 0.06 | 51 | EL | 2348 | − 277,272 | 559,240 | − 171,677 | ** |
EUL | 96,798 | −268,660 | 730,917 | ||||||
Birds | 7000 | 0.12 | 32 | EL | 14,285 | −4,181,534 | 8,391,639 | − 704,755 | 1.3E + 388 |
EUL | 448,192 | −4,100,005 | 9,096,394 |