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Table 2 EL and EUL model choice

From: The prevalence of terraced treescapes in analyses of phylogenetic data sets

Taxon Number of taxa Taxon coverage density Number of loci Model Number of parameters Log likelihood AIC AIC [EL] – AIC [EUL]# Terrace size
Insects 144 0.95 472^ EL 757 −30,914,676 61,830,867 417,292 1
EUL 134,992 −30,571,795 61,413,574
Caryophyllales.2 95 0.92 1120^^ EL 1307 −20,001,090 40,004,795 184,811 1
EUL 210,560 −19,699,432 39,819,984
1000 Plants.2 102 0.91 620 EL 5781 −8,873,326 17,758,215 136,442 1
EUL 130,200 −8,680,687 17,621,773
1000 Plants.1 102 0.97 8 EL 273 −8,881,093 17,762,731 43,552 1
EUL 1680 −8,857,910 17,719,179
Caryophyllales.1 95 0.98 209 EL 396 −3,490,762 6,982,316 30,510 1
EUL 39,292 −3,436,611 6,951,806
Mammals 169 0.94 26 EL 569 −1,227,939 2,457,016 18,145 1
EUL 8944 −1,210,492 2,438,871
Chameleons 202 0.92 6 EL 455 − 188,780 378,471 4565 1
EUL 2460 −184,493 373,906
Scincid lizards 213 0.78 6 EL 477 −129,669 260,291 1410 3
EUL 2592 − 126,849 258,881
Euphorbia* 131 0.28 7 EL 322 −46,304 93,252 435 759
EUL 1876 −44,533 92,817
Iris* 137 0.33 6 EL 311 −29,602 59,827 −46 1
EUL 1596 −28,340 59,872
Allium* 57 0.24 6 EL 155 −15,288 30,886 − 217 973,215
EUL 660 −14,891 31,102
Primula* 185 0.43 6 EL 421 −43,494 87,831 − 801 466
EUL 2256 −42,060 88,631
Ficus* 112 0.36 5 EL 264 −14,185 28,897 − 963 851,445
EUL 1140 −13,790 29,860
Syzygium* 106 0.35 5 EL 254 −14,557 29,622 − 1085 45
EUL 1090 −14,264 30,707
Solanum* 187 0.31 7 EL 434 −39,049 78,967 − 1410 211.9 million
EUL 2660 −37,528 80,376
Caryophyllaceae* 225 0.29 7 EL 498 −67,977 136,951 − 1619 718.3 billion
EUL 3108 −66,177 138,570
Asplenium* 133 0.21 6 EL 317 −29,688 60,010 − 1758 8269
EUL 1632 −29,252 61,768
Eucalyptus* 136 0.23 6 EL 309 −14,683 29,984 − 1832 27
EUL 1584 −14,324 31,816
Ranunculus* 170 0.31 7 EL 400 −32,738 66,276 − 1986 1
EUL 2422 −31,709 68,262
Rhododendron* 117 0.35 7 EL 294 −22,049 44,687 − 2025 1034
EUL 1680 −21,676 46,712
Rosaceae* 529 0.30 7 EL 1118 −83,932 170,101 − 6350 1.72E + 23
EUL 7448 −80,777 176,451
Lichenized fungi 1317 0.44 9 EL 2712 − 499,157 1,003,737 − 8260 11,655
EUL 23,760 − 482,238 1,011,997
Primates 372 0.37 79 EL 1452 −648,012 1,298,927 −41,745 70.8 million
EUL 59,250 −611,086 1,340,672
Bats 815 0.15 29 EL 1888 − 589,602 1,182,979 −51,491 1.43E + 41
EUL 47,444 −569,791 1,234,470
Saxifragales 946 0.06 51 EL 2348 − 277,272 559,240 − 171,677 **
EUL 96,798 −268,660 730,917
Birds 7000 0.12 32 EL 14,285 −4,181,534 8,391,639 − 704,755 1.3E + 388
EUL 448,192 −4,100,005 9,096,394
  1. #: column displays ΔAIC if ΔAIC favors the EUL model, and -ΔAIC otherwise. ^ and ^^: the number of loci differs from that reported in Table 1, because we discarded loci that contained fewer than the full complement of amino acids. ^: 7 loci were discarded; ^^: 2 loci were discarded. * and **: see Table 1. For methods used to compare the models, see text