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Table 1 Remarkable differences for ordinal or supraordinal taxa between JS Nelson, T Grande and MVH Wilson's (NGW [42]) classification and the update proposed herein. The circumscription of other orders may also differ due to variations in family validation (see Table 2) or due to inclusion of fossil taxa in NGW. Differences in taxonomic ranks and endings are considered minor and thus are not listed herein. NEL: [41]

From: Phylogenetic classification of bony fishes

Taxon (order-level or above)

Differences with NGW

Justification/Remarks

Teleostomi, Ginglymodi, Halecomorphi and Teleosteomorpha/Teleocephala

Not classified herein

Redundant with Osteichthyes, Amiiformes, Lepisosteiformes, and Teleostei, respectively, when only extant taxa are considered.

Dipnotetrapodomorpha

Not classified by NGW

Only shown in one of NGW’s cladograms but not formally classified therein.

Actinopteri

Not classified by NGW

Non-polypteriform actinopterygiians; a robust clade.

Elopocephalai

Not classified by NGW

Not a major difference; it is redundant with Elopomorpha.

Anguilliformes, Gadiformes

Classified into suborders in NGW but not herein

Phylogenetic incongruence with most subordinal classifications.

Cypriniformes

Classified into suborders herein but not in NGW

Following [102].

Cetopsoidei

Not classified herein

The subordinal classification for Siluriformes follows [198].

Protacanthopterygii

Includes four orders herein and only two in NGW

Differences are in part due to phylogenetic uncertainty. We classify this taxon as sedis mutabilis.

Zoroteleostei

Classified by NGW only

Circumscription of this taxon is in conflict with Protacanthopterygii. See comments in text.

Osmeromorpha

Classified by NGW only

Circumscription of this taxon is incongruent with all recent higher-level phylogenetic analyses of fishes. See comments in text.

Stomiati

Not classified by NGW

The circumscription of Stomiati herein is in conflict with NGW’s Osmeromorpha. See comments above and in text.

Stomiiformes/Stomiatiformes

Spelling

Stomiatiformes sensu [43]; Stomiiformes sensu [207].

Stomiatoidei/Phosichthyoidei

Phosichthyoidei sensu NGW; Stomiatoidei herein

Based on Stomiidae.

Paracanthopterygii

Includes Polymixiiformes in NGW but not here

Polymixia has a rogue placement among early acanthomorphs. Our classification is robust to phylogenetic uncertainty.

Zeiogadaria

Not classified by NGW

Denotes a robust clade including Zeiformes + (Stylephoriformes + Gadiformes); this taxon has been recognized before (i.e., Zeiogadiformes sensu [80]).

Berycimorphaceae/Berycida

Berycida sensu NGW is similar to Berycimorphaceae as classified herein, but the former includes Holocentriformes

Holocentridae is sometimes recovered as the sister taxon of percomophs, which may render Berycida sensu NGW non-monophyletic.

Anoplogastroidei

Not classified herein

Not monophyletic.

Trachichthyoidei

Not classified herein

Not monophyletic.

Holocentrimorphaceae

Not classified by NGW

Included in Berycida sensu NGW. See comments above.

Pelagiaria

Not classified by NGW

A robust clade (series) including 17 families in the order Scombriformes, as classified herein.

Scombriformes

Includes 17 families herein and only nine in NGW

Scombriformes sensu NGW is paraphyletic considering all higher-level molecular phylogenies of percomorphs.

Scombroidei and Stromateoidei

Not classified herein

Interfamilial resolution in Scombriformes is tenuous; classification of scombriform families into suborders requires further work.

Icosteiformes

Not classified herein

Icosteidae, the sole family in this order, is part of Pelagiaria (Scombriformes) herein.

Scombrolabraciformes

Not classified herein

Scombrolabracidae, the sole family in this order, is part of Pelagiaria (Scombriformes) herein.

Trachiniformes

Not classified herein (similar to Uranoscopiformes)

Trachiniformes sensu NGW is polyphyletic. It includes families placed in Pelagiaria and Eupercaria.

Syngnatharia

Not classified by NGW

A robust clade (series) including 10 families in the order Syngnathiformes, as classified herein.

Syngnathiformes

Includes 10 families herein and eight in NGW

Exclusion of Mullidae and Callionymoidei renders Syngnathiformes paraphyletic.

Aulostomoidei

Not classified herein

Not monophyletic.

Callionymiformes

Suborder (Callionymoidei) of Syngnathiformes herein

Recognition of Callionymiformes as a separate order renders Syngnathiformes paraphyletic.

Anabantaria

Not classified by NGW

A robust clade (series) including the orders Synbranchiformes (including Indostomidae) and Anabantiformes.

Indostomoidei

Not classified by NGW

Indostomidae is not included in Synbranchiformes by NGW; exclusion of this family renders the order (and component suborders) non-monophyletic.

Nandoidei

Not classified by NGW

The order Anabantiformes in classified in three suborders herein. This scheme is robust to phylogenetic uncertainity.

Carangaria

Not classified by NGW

A robust clade (series) including the orders Istiophoriformes, Carangiformes, Pleuronectiformes and several families listed as order-level incertae sedis.

Istiophoriformes

Includes two families herein and three in NGW

Inclusion of Sphyraenidae renders Istiophoriformes non-monophyletic.

Belonoidei/Exocoetoidei

Exocoetoidei sensu NGW; Belonoidei herein

Belonoidei is the name-bearer.

Eupercaria

Not classified by NGW

A robust clade (series) including at least 17 orders and 161 families. The order Perciformes belongs in this clade.

Gerreiformes

Not classified by NGW

Includes the family Gerreidae, which is sister to all other eupercarians (listed under Perciformes in NGW).

Acanthuriformes

Includes three families herein and five in NGW

Inclusion of Emmelichthyidae and Sciaenidae renders Acanthuriformes non-monophyletic.

Acanthuroidei and Sciaenoidei

Not classified herein

See comment under Acanthuriformes above.

Moroniformes/Ephippiformes

Moroniformes in NGW (three families) and Ephippiformes herein (two families)

Our results do not support a close relationship between Moronidae and Drepaneidae + Ephippidae.

Spariformes

Includes three families herein and six in NGW

Inclusion of Callanthiidae, Lobotidae (including Datnioididae) and Sillaginidae renders Spariformes non-monophyletic.

Chaetodontiformes

Not classified by NGW

A robust clade (order) including the families Chaetodontidae and Leiognathidae.

Lobotiformes

Not classified by NGW

A robust clade (order) including the families Hapalogenyidae, Datnioididae and Lobotidae (listed in Spariformes or Perciformes in NGW).

Lutjaniformes

Not classified by NGW

A robust clade (order) including the families Lutjanidae and Haemulidae (listed under Perciformes in NGW).

Priacanthiformes

Not classified by NGW

A robust clade (order) including the families Priacanthidae and Cepolidae (listed under Perciformes in NGW).

Uranoscopiformes

Not classified by NGW

A robust clade (order) including the families Ammodytidae, Cheimarrichthyidae, Pinguipedidae and Uranoscopidae (listed under Trachiniformes in NGW).

Moloidei

Not classified by NGW

Placement of Molidae in Tetraodontoidei often results in the non-monophyly of this suborder. The subordinal classification for Tetraodontiformes is robust to phylogenetic uncertainty

Triacanthodoidei

Not classified by NGW

Placement of Triacanthodidae in Triacanthoidei often results in the non-monophyly of this suborder. The subordinal classification for Tetraodontiformes is robust to phylogenetic uncertainty

Ostracioidea/Ostracioidei

Spelling

NGW recognize the “Suborder Ostracioidea”, but the appropriate ending for the rank suborder is “-iodei.”

Pempheriformes

Not classified by NGW

A robust clade (order) including 17 families (most listed under Perciformes in NGW).

Centrarchiformes

Not classified by NGW

A robust clade (order) including five suborders and 18 families (most listed under Perciformes in NGW).

Perciformes

Includes 61 families herein and 62 in NGW (but with very different circumscriptions)

Our definition of Perciformes is monophyletic; NGW maintain the status quo by treating Perciformes as a taxonomic waste basket (polyphyletic).

Percoidei

Includes three families herein and 46 in NGW

Our definition of Percoidei is monophyletic; NGW maintain the status quo by treating Percoidei as a taxonomic waste basket (polyphyletic).

Serranoidei

Not classified by NGW

Includes Serranidae.

Bembropoidei

Not classified by NGW

Includes Bembropidae.

Notothenioidei

Includes nine families herein and eight in NGW

The family Percophidae is a member of Notothenioidei herein [following 242], whereas in NGW it belongs in Trachiniformes.

Scorpaeniformes

Includes several families in NGW  that are part of four different perciform suborders herein

Recognition of Scorpaeniformes as a separate order renders Perciformes non-monophyletic.

Gasterosteoidei/Gasterosteales

Gasterosteoidei (suborder of Scorpaeniformes) in NGW and Gasterosteales (suborder of Perciformes) herein

Gasterosteales herein is similar to Gasterosteoidei sensu NGW, except that the former excludes Indostomidae (classified under Synbranchiformes herein).

Ceratodontoidei

Not classified by NGW

Classified by NEL.

Lepidosirenoidei

Not classified by NGW

Highlights sister-group relationship between African and South American lungfishes (see also NEL).