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Table 1 Bacterial species known not to contain secondary metabolite gene clusters

From: Assessing in silico the recruitment and functional spectrum of bacterial enzymes from secondary metabolism

Bacterial species and description Tax-ID
Dehalococcoides sp. VS
Chloroflexi (ph), Dehalococcoidia (cl), Dehalococcoidales (or), Dehalococcoidaceae (fa), Dehalococcoides (gn)
Anaerobic, obligately organohalide-respiring
311424
Dehalogenimonas lykanthroporepellens BL-DC-9
Chloroflexi (ph), Dehalococcoidia (cl), Dehalogenimonas (gn)
Strictly anaerobic, mesophilic, non spore-forming, Gram-negative
552811
Chloroflexus aurantiacus J-10-fl
Chloroflexi (ph), Chloroflexia (cl), Chloroflexales (or), Chloroflexaceae (fa), Chloroflexus (gn)
Filamentous anoxygenic phototroph, thermophilic green bacterium
324602
Deferribacter desulfuricans SSM1
Deferribacteres (ph), Deferribacterales (or), Deferribacteraceae (fa), Deferribacter (gn)
Strictly anaerobic, thermophilic, sulphur-reducing, heterotroph
639282
Calditerrivibrio nitroreducens Yu37-1
Deferribacteres (ph), Deferribacterales (or), Deferribacteraceae (fa)
Strictly anaerobic, moderately thermophilic, nitrate-reducing, Gram-negative, non-sporulating
768670
Denitrovibrio acetiphilus N2460
Deferribacteres (ph), Deferribacterales (or), Deferribacteraceae (fa), Denitrovibrio (gn)
Obligately anaerobic, mesophilic, nitrate reducing
522772
Flexistipes sinusarabici MAS10
Deferribacteres (ph), Deferribacterales (or), Deferribacteraceae (fa), Flexistipes (gn)
Strictly anaerobic, moderately thermophilic, Gram-negative, non-motile, heterotrophic, marine habitat
717231
Desulfurispirillum indicum S5
Chrysiogenetes (ph), Chrysiogenales (or), Chrysiogenaceae (fa), Desulfurispirillum (gn)
Strictly anaerobic, uses selenate, selenite, arsenate, nitrate or nitrite as terminal electron acceptors
653733
Thermodesulfatator indicus CIR 29812
Thermodesulfobacteria (ph), Thermodesulfobacteriales (or), Thermodesulfobacteriaceae (fa), Thermodesulfatator (gn)
Anaerobic, thermophilic, chemolithoautotrophic sulfate reducer isolated from a deep-sea hydrothermal vent
667014
Thermanaerovibrio acidaminovorans Su883
Synergistetes (ph), Synergistia (cl), Synergistales (or), Synergistaceae (fa), Thermanaerovibrio (gn)
Anaerobic, isolated from an reactor of a sugar refinery, Gram-negative, motile, non-spore-forming
525903
Aminobacterium colombiense ALA-1
Synergistetes (ph), Synergistia (cl), Synergistales (or), Synergistaceae (fa), Aminobacterium (gn)
Isolated from an anaerobic lagoon, mesophilic, amino acid fermenting, Gram-negative, non-sporulating
572547
Thermovirga lienii Cas60314
Synergistetes (ph), Synergistia (cl), Synergistales (or), Synergistaceae (fa), Thermovirga (gn)
Anaerobic, thermophilic, chemoorganotrophic, Gram-negative, motile, from a marine oil well
580340
Akkermansia muciniphila ATCC BAA-835
Verrucomicrobia (ph), Verrucomicrobiae (cl), Verrucomicrobiales (or), Akkermansiaceae (fa), Akkermansia (gn)
Anaerobic, isolated from the human intestinal tract
349741
Thermus scotoductus SA-01
Deinococcus-Thermus (ph), Deinococci (cl), Thermales (or), Thermaceae (fa), Thermus (gn)
Growth with oxygen and nitrate as terminal electron acceptors, reduces a variety of metal ions
743525
Candidatus Cloacamonas acidaminovorans
Candidatus Cloacimonetes (ph), Candidatus Cloacimonas (gn)
Anaerobic digester of a municipal wastewater treatment plant
459349
  1. The respective genomes are part of KEGG databases. The name, the NCBI Tax-ID and the phylogenetic lineage are listed; abbreviations are: phylum (ph), class (cl), order (or), family (fa), genus (gn). Additionally, a short description of the habitat and of the species are given, which were taken from [19]