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Table 1 Bacterial species known not to contain secondary metabolite gene clusters

From: Assessing in silico the recruitment and functional spectrum of bacterial enzymes from secondary metabolism

Bacterial species and description Tax-ID
Dehalococcoides sp. VS Chloroflexi (ph), Dehalococcoidia (cl), Dehalococcoidales (or), Dehalococcoidaceae (fa), Dehalococcoides (gn) Anaerobic, obligately organohalide-respiring 311424
Dehalogenimonas lykanthroporepellens BL-DC-9 Chloroflexi (ph), Dehalococcoidia (cl), Dehalogenimonas (gn) Strictly anaerobic, mesophilic, non spore-forming, Gram-negative 552811
Chloroflexus aurantiacus J-10-fl Chloroflexi (ph), Chloroflexia (cl), Chloroflexales (or), Chloroflexaceae (fa), Chloroflexus (gn) Filamentous anoxygenic phototroph, thermophilic green bacterium 324602
Deferribacter desulfuricans SSM1 Deferribacteres (ph), Deferribacterales (or), Deferribacteraceae (fa), Deferribacter (gn) Strictly anaerobic, thermophilic, sulphur-reducing, heterotroph 639282
Calditerrivibrio nitroreducens Yu37-1 Deferribacteres (ph), Deferribacterales (or), Deferribacteraceae (fa) Strictly anaerobic, moderately thermophilic, nitrate-reducing, Gram-negative, non-sporulating 768670
Denitrovibrio acetiphilus N2460 Deferribacteres (ph), Deferribacterales (or), Deferribacteraceae (fa), Denitrovibrio (gn) Obligately anaerobic, mesophilic, nitrate reducing 522772
Flexistipes sinusarabici MAS10 Deferribacteres (ph), Deferribacterales (or), Deferribacteraceae (fa), Flexistipes (gn) Strictly anaerobic, moderately thermophilic, Gram-negative, non-motile, heterotrophic, marine habitat 717231
Desulfurispirillum indicum S5 Chrysiogenetes (ph), Chrysiogenales (or), Chrysiogenaceae (fa), Desulfurispirillum (gn) Strictly anaerobic, uses selenate, selenite, arsenate, nitrate or nitrite as terminal electron acceptors 653733
Thermodesulfatator indicus CIR 29812 Thermodesulfobacteria (ph), Thermodesulfobacteriales (or), Thermodesulfobacteriaceae (fa), Thermodesulfatator (gn) Anaerobic, thermophilic, chemolithoautotrophic sulfate reducer isolated from a deep-sea hydrothermal vent 667014
Thermanaerovibrio acidaminovorans Su883 Synergistetes (ph), Synergistia (cl), Synergistales (or), Synergistaceae (fa), Thermanaerovibrio (gn) Anaerobic, isolated from an reactor of a sugar refinery, Gram-negative, motile, non-spore-forming 525903
Aminobacterium colombiense ALA-1 Synergistetes (ph), Synergistia (cl), Synergistales (or), Synergistaceae (fa), Aminobacterium (gn) Isolated from an anaerobic lagoon, mesophilic, amino acid fermenting, Gram-negative, non-sporulating 572547
Thermovirga lienii Cas60314 Synergistetes (ph), Synergistia (cl), Synergistales (or), Synergistaceae (fa), Thermovirga (gn) Anaerobic, thermophilic, chemoorganotrophic, Gram-negative, motile, from a marine oil well 580340
Akkermansia muciniphila ATCC BAA-835 Verrucomicrobia (ph), Verrucomicrobiae (cl), Verrucomicrobiales (or), Akkermansiaceae (fa), Akkermansia (gn) Anaerobic, isolated from the human intestinal tract 349741
Thermus scotoductus SA-01 Deinococcus-Thermus (ph), Deinococci (cl), Thermales (or), Thermaceae (fa), Thermus (gn) Growth with oxygen and nitrate as terminal electron acceptors, reduces a variety of metal ions 743525
Candidatus Cloacamonas acidaminovorans Candidatus Cloacimonetes (ph), Candidatus Cloacimonas (gn) Anaerobic digester of a municipal wastewater treatment plant 459349
  1. The respective genomes are part of KEGG databases. The name, the NCBI Tax-ID and the phylogenetic lineage are listed; abbreviations are: phylum (ph), class (cl), order (or), family (fa), genus (gn). Additionally, a short description of the habitat and of the species are given, which were taken from [19]