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Table 1 Sample information

From: Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation

Species

Museum accession

GenBank Accession

Reference

Common Name

Average mtDNA Coverage

Alopecoenas salamonis b c

AMNH 224546

KX902250

 

Thick-billed ground dove

205.0

Caloenas nicobarica b

N2009-0024

KX902248

 

Nicobar pigeon

48.6

Caloenas maculata b c

D3538

KX902249

[16]

Spotted green pigeon

977.6

Chalcophaps indica

JEM68

HM746789

[19]

Common emerald dove

Columba janthina

KM926619

[60]

Japanese wood pigeon

Columba jouyi b c

AMNH 612456

KX902247

 

Ryukyu pigeon

74.3

Columba livia

KJ722068

[61]

Rock dove

Columba livia

NC_013978

[42]

Rock dove

Columba rupestris a

SRS346866

KX902246

 

Hill pigeon

237.5

Didunculus strigirostris b

OMNH 1764

KX902245

 

Tooth-billed pigeon

22.5

Ectopistes migratorius b c

FMNH 47395

KX902243

 

Passenger pigeon

239.6

Ectopistes migratorius b c

FMNH 47397

KX902244

 

Passenger pigeon

238.7

Gallicolumba luzonica

JEM 65

HM746790

[19]

Luzon bleeding-heart

Gallus gallus

NC_007236

[62]

Chicken

Geopelia striata

JEM 72

HM746791

[19]

Zebra dove

Geotrygon violacea

IC 1166

NC_015207

[19]

Violaceous quail-dove

Goura cristata b

OMNH 1762

KX902242

 

Western crowned pigeon

45.0

Hemiphaga novaeseelandiae

NC_013244

[17]

New Zealand pigeon

Leptotila verreauxi

ML 795

NC_015190

[19]

White-tipped dove

Otidiphaps nobilis b

OUMNH 1759

KX902241

 

Pheasant pigeon

18.5

Patagioenas fasciata b

AMNH DOT 14025

KX902239

 

Band-tailed pigeon

173.5

Patagioenas fasciata b

BTP2013

KX902240

 

Band-tailed pigeon

17.4

Pezophaps solitaria b c

S1B1

KX902238

 

Rodrigues solitaire

11.1

Pterocles gutturalis a

SRP029347

KX902237

 

Yellow-throated sandgrouse

49.2

Pterocles namaqua d

AJB1452

[45]

Namaqua sandgrouse

Raphus cucullatus b c

ZMUC AVES-105485

KX902236

 

Dodo

21.4

Streptopelia chinensis

KP273832

[63]

Spotted dove

Turtur tympanistria

JEM 60

HM746793

[19]

Tambourine dove

Zenaida auriculata

ML 840

NC_015203

[19]

Eared dove

Zenaida macroura b

Zm1

KX902235

 

Mourning dove

112.8

  1. The table lists the species that were used in the phylogenetic reconstruction. The symbol aindicates a new mitochondrial genome assembly, bmeans that the specimen was also sequenced as part of the present work. The symbol cdenotes an extinct species. The sign dindicates that instead of a complete mitochondrial genome, the following genes were concatenated: 16S, 12S, ATP8, ATP6, CYTB, COIII, COII, COI, ND5, ND4, ND4L, ND3, ND2, ND1.