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Fig. 3 | BMC Evolutionary Biology

Fig. 3

From: Shedding light on the expansion and diversification of the Cdc48 protein family during the rise of the eukaryotic cell

Fig. 3

WebLogo representation of the key sequence elements of the Cdc48 family. Sequence logos were generated from alignments of the D-domains of different Cdc48 family members using the WebLogo software [119]. Alignment contained more than 500 eukaryotes. The key regions involved in nucleotide binding and hydrolysis and the pore loop as defined by [13, 14, 18] are shown. The overall height of a stack indicates the sequence conservation at a certain position; the height of the symbols within the stack indicates the relative frequency of each amino acid at that position. The sequence logo of the entire alignment is provided in Additional file 12: Figue S8

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