Skip to main content

Table 1 Genetic diversity based on Arlequin Ver 3.11 software and demographical parameters based on coalescent analysis performed with Lamarc 2.1.9 software for 17 populations of Tabebuia serratifolia

From: Demographical history and palaeodistribution modelling show range shift towards Amazon Basin for a Neotropical tree species in the LGM

 

cpDNA

ITS

Combined cpDNA and ITS nrDNA

Pop

N

k

h

Ï€

SD

k

h

Ï€

SD

θ

θ - 95 % CI

Ne

Ne - 95 % CI

North - Northeast

 CCM

20

2

0.100

0.0001

0.0001

1

0.000

0.0000

0.0000

0.0001

0.0001 – 0.0004

270.34

270.34 – 1081.37

 CRA

09

9

1.000

0.0065

0.0037

2

0.389

0.0075

0.0047

0.0071

0.0023 – 0.0231

19194.38

6217.90 – 62449.31

 POF

27

8

0.752

0.0012

0.0008

3

0.145

0.0003

0.0005

0.0009

0.0005 – 0.0024

2433.09

1351.72 – 6488.24

 SEC

04

2

0.500

0.0009

0.0008

3

0.833

0.0035

0.0030

–

–

–

–

Central – Central West

 ALT

32

16

0.845

0.0022

0.0012

2

0.405

0.0008

0.0008

0.0071

0.0001 – 0.0229

19194.38

270.34 – 61908.62

 ARA

13

4

0.423

0.0008

0.0006

2

0.385

0.0007

0.0008

0.0006

0.0001 – 0.0019

1622.06

270.34 – 5136.52

 BOD

10

4

0.533

0.0005

0.0004

1

0.000

0.0000

0.0000

0.0003

0.0001 – 0.0011

811.03

270.343 – 2973.78

 GSV

03

1

0.000

0.0000

0.0000

2

1.000

0.0039

0.0036

–

–

–

–

 LUZ

30

4

0.356

0.0008

0.0006

2

0.131

0.0003

0.0004

0.0006

0.0002 – 0.0013

1622.06

540.69 – 3514.46

 MIM

13

7

0.846

0.0031

0.0018

5

0.756

0.0090

0.0004

0.0024

0.0009 – 0.0068

6488.24

2433.09 – 18383.35

 POT

02

2

1.000

0.0040

0.0043

1

0.000

0.0000

0.0000

–

–

–

–

 PNA

04

2

0.500

0.0003

0.0004

1

0.000

0.0000

0.0000

–

–

–

–

Southeast

 CAP

23

8

0.629

0.0010

0.0006

1

0.000

0.0000

0.0000

0.0008

0.0005 – 0.0014

2162.75

1351.72 – 3784.81

 PNI

21

11

0.871

0.0032

0.0018

6

0.758

0.0080

0.0048

0.0038

0.0014 – 0.0124

10273.05

3784.81 – 33522.57

 SAB

06

4

0.866

0.0047

0.0029

2

0.533

0.0010

0.0011

0.0012

0.0004 – 0.0117

3244.12

1081.37 – 31630.17

 SCA

21

7

0.500

0.0009

0.0006

2

0.095

0.0007

0.0008

0.0009

0.0004 – 0.0016

2433.09

1081.37 – 4325.49

 SUM

19

3

0.205

0.0009

0.0006

3

0.298

0.0022

0.0017

0.0005

0.0002 – 0.0955

1351.72

540.69 – 258177.90

Mean

–

5.53

0.584

–

–

2.29

0.337

–

–

–

–

–

–

SD

–

3.99

0.306

–

–

1.40

0.335

–

–

–

–

–

–

Overall

257

79

0.873

0.0032

0.0017

21

0.772

0.0058

0.0034

0.0275

0.0221–0.0355

74344.42

59745.88 – 95971.88

  1. N sample size, k - number of haplotypes, h haplotype diversity, π nucleotide diversity, SD standard deviation, θ coalescent or mutation parameter, Ne effective population size; 95 % CI is the credibility interval at 95 %. Θ and Ne were estimated for combined cpDNA and ITS data