Table 4 Protein sequences of 10 L. vannamei TE families used for blastp search
From: Close ecological relationship among species facilitated horizontal transfer of retrotransposons
| Â | Length (aa) | Conserved domain | Accession | Interval | E-value |
|---|---|---|---|---|---|
BEL-1_LVa-I | 1413 | RT_pepA17 | cd01644 | 341–549 | 1.03e-68 |
Peptidase_A17 super family | cl05112 | 567–771 | 4.02e-50 | ||
pepsin_retropepsin_like super family | cl11403 | 49–203 | 3.20e-14 | ||
rve | pfam00665 | 1079–1179 | 1.24e-06 | ||
Gypsy-14_LVa-I | 874 | rve | pfam00665 | 765–870 | 4.32e-16 |
Nimb-1_LVa | 1286 | RT_nLTR_like | cd01650 | 520–777 | 1.19e-44 |
Rnase_HI_RT_non_LTR | cd09276 | 991–1112 | 5.91e-26 | ||
EEP super family | cl00490 | 97–240 | 5.03e-27 | ||
RVT_1 | pfam00078 | 528–741 | 4.87e-24 | ||
Nimb-2_LVa | 896 | RT_like super family | cl02808 | 399–643 | 4.63e-25 |
Exo_endo_phos_2 | pfam14529 | 34–155 | 3.52e-23 | ||
RVT_1 | pfam00078 | 416–615 | 2.13e-12 | ||
Penelope-1_LVa | 808 | RT_like | cd00304 | 459–543 | 1.20e-08 |
GIY-YIG_SF super family | cl15257 | 691–775 | 2.31e-10 | ||
RT_G2_intron | cd01651 | 371–498 | 1.24e-06 | ||
Penelope-3_LVa | 826 | RT_like | cd00304 | 480–574 | 2.68e-09 |
GIY-YIG_SF super family | cl15257 | 752–824 | 1.61e-07 | ||
Penelope-6_LVa | 692 | GIY-YIG_SF super family | cl15257 | 615–680 | 7.08e-09 |
RT_like super family | cl02808 | 362–455 | 2.54e-06 | ||
RTE-1_LVa | 746 | RT_nLTR_like | cd01650 | 265–546 | 3.97e-49 |
RVT_1 | pfam00078 | 295–546 | 2.74e-30 | ||
RTE-2_LVa | 980 | RT_nLTR_like | cd01650 | 544–797 | 4.65e-65 |
L1-EN | cd09076 | 47–287 | 2.06e-36 | ||
RVT_1 | pfam00078 | 555–772 | 1.93e-32 | ||
RTE-3_LVa | 1165 | RT_nLTR_like | cd01650 | 735–995 | 9.97e-54 |
L1-EN | cd09076 | 222–466 | 4.64e-43 | ||
RVT_1 | pfam00078 | 750–995 | 1.27e-28 |