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Table 1 Classification of 395 TE transcripts in L. vannamei transcriptome

From: Close ecological relationship among species facilitated horizontal transfer of retrotransposons

Group Superfamily/clade Number Sum Family/consensus sequence (number of transcripts)
DNA transposon EnSpm/CACTA 1   -
Harbinger 2   Harbinger-N1_LVa (2)
Mariner/Tc1 1   -
hAT 1   -
Unknown 4 9 DNA8-1_LVa (2)
LTR retrotransposon BEL 33   BEL-1_LVa-I (6), BEL-2_LVa (1)
Copia 6   -
DIRS 1   -
Gypsy 56 96 Gypsy-12_LVa-I (3), Gypsy-14_LVa-I (3), Gypsy-16_LVa (3), Gypsy-17_LVa (4), Gypsy-18_LVa (1), Gypsy-1_LVa-I (1), Gypsy-3_LVa-I (1), Gypsy-4_LVa-I (7), Gypsy-5_LVa-I (1)
Non-LTR retrotransposon CR1 50   Penelope-6_LVa (4)
Crack 2   -
Daphne 3   -
I 3   -
Ingi 15   Ingi-1_LVa (5)
Jockey 1   Jockey-1_LVa (1)
Kiri 1   -
L2B 1   -
Nimb 53   Nimb-N2_LVa (1), Nimb-2_LVa (6), Nimb-1_LVa (30)
Penelope 52   Penelope-1_LVa (31), Penelope-2_LVa (5), Penelope-3_LVa (8), Penelope-4_LVa (3), Penelope-5_LVa (2), Penelope-8_LVa (1)
RTE 93   RTE-1_LVa (2), RTE-2_LVa (20), RTE-3_LVa (66), Gypsy-3_LVa-LTR (1)
RTEX 1   -
Unknown 9 284 NonLTR-1_LVa (8)
Unknown Unknown 6 6 TE-1_LVa (1)