Skip to main content

Table 3 Maximum log-likelihood scores and AU test p-values under different models of sequence evolution for three possible basal rodent relationships.

From: Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades

Model of sequence evolution

JTT + Γ4

Rate shift model + Γ4

Codon model + Γ4 (without positive selection)

Topology

Diff -ln L

p-value

Diff -ln L

p-value

Diff -ln L

p-value

Squirrel-related clade at the base

<32,963.68>

0.580

<32,936.35>

0.586

0.9

0.517

Ctenohystrica at the base

0.2

0.563

0.3

0.558

<77,788.57>

0.623

Mouse related clade at the base

3.2

0.031

3.1

0.035

4.0

0.158

  1. Significant p-values are indicated in bold. The log-likelihood value of the best tree is indicated between brackets.