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Table 4 Control region mtDNA haplotypes (with numbered polymorphic sites), haplotype frequencies, shared haplotypes and indices of population diversity for Carcharhinus sorrah.

From: The extent of population genetic subdivision differs among four co-distributed shark species in the Indo-Australian archipelago

C. sorrah haplotypes (375 bases) Total N = 49

Haplotype

3

4

5

5

1

1

1

1

2

2

2

3

3

3

3

3

Indonesia

(n = 8)

West Australia

(n = 8)

East Australia

(n = 13)

Gulf of Carpentaria

(n = 20)

 

9

5

0

6

2

3

4

7

3

3

9

0

1

1

2

5

    
     

0

9

9

8

1

7

8

9

0

4

0

2

    

   CS01

T

G

T

C

A

C

A

A

T

A

T

A

T

G

A

C

0.250

-

-

-

   CS02

.

.

.

A

.

.

.

.

.

.

.

.

.

.

.

.

0.500

-

-

0.050

   CS03

.

.

C

A

G

.

G

.

C

.

C

.

.

.

.

.

-

-

0.077

-

   CS04

.

.

C

A

G

T

G

.

C

.

.

.

.

.

.

.

-

-

0.385

-

   CS05

.

.

C

A

G

T

G

.

C

.

C

.

.

.

.

.

-

0.875

0.308

0.600

   CS06

.

A

C

A

G

T

G

.

C

.

C

.

.

.

.

.

-

-

-

0.050

   CS07

C

.

C

A

G

T

G

G

C

.

C

.

.

.

.

.

-

-

0.077

-

   CS08

.

.

C

A

G

T

G

G

C

.

C

.

.

.

.

.

-

0.125

0.154

0.100

   CS09

.

.

C

A

G

T

G

G

C

G

C

.

.

.

.

.

-

-

-

0.100

   CS10

.

.

.

.

.

.

.

.

.

.

C

.

.

.

.

.

0.250

-

-

-

   CS11

.

.

C

A

G

.

G

G

C

.

C

.

.

.

.

.

-

-

-

0.050

   CS12

.

A

C

A

G

T

G

.

C

.

C

G

C

C

G

T

-

-

-

0.050

Number of haplotypes

3

2

5

7

Number of polymorphic sites

2

1

4

14

Nucleotide diversity per site (within population, %)

0.267 ± 0.228

0.067 ± 0.095

0.324 ± 0.247

0.535 ± 0.351

Haplotype diversity per location (within population)

0.714 ± 0.123

0.250 ± 0.180

0.782 ± 0.079

0.642 ± 0.118

  1. Key: Haplotype CS01 has Genbank accession number FJ161688.
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BMC Ecology and Evolution

ISSN: 2730-7182

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