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Figure 1 | BMC Evolutionary Biology

Figure 1

From: SNP@Evolution: a hierarchical database of positive selection on the human genome

Figure 1

Data collecting and processing strategy for building SNP@Evolution. HapMap, UCSC, OMIM, and Haplotter were major sources for SNP, Gene, and iHS. After computation and processing with a sliding window and empirical distribution method, we obtained five types of outcomes that may contain evolutionary signals in the human genome including low HET or highly differentiated regions, F ST outliers of SNPs, ES values of HET and F ST on genes, and SNP outliers of iHS. In order to visualize these datasets, we used PHP and GMOD to build the table and figure interfaces. Links to the public online databases, including Entrez Nucleotide, dbSNP, OMIM, and HapMap, are provided together with the query results in SNP@Evolution.

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