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Table 1 Polymorphism in CYTB within focal regions for T. californicus

From: Investigations of fine-scale phylogeography in Tigriopus californicusreveal historical patterns of population divergence

Region

Site

Indivs.

Hap. #

Syn.1

Nonsyn.

Ï€syn2

Ï€total

Taj-D3

FW-H4

Santa Cruz

NB1

10

1

0

0

0

0

NA

NA

 

NB2

10

3

1

1

0.00127

0.00049

-0.69

0.44

 

BH

10

2

1

0

0.00127

0.00031

0.01

-1.07

 

SCN

15

3

5

3

0.00441

0.00184

-0.57

-1.41

 

SC2

5

1

0

0

0

0

N/A

N/A

 

SC3

10

3

5

1

0.00618

0.00185

-0.06

-0.71

 

SC4

10

2

3

3

0.00214

0.00106

-1.79*

-6.04**

 

SC5

10

2

4

1

0.00285

0.00088

-1.74*

-4.44**

 

LH

10

2

1

2

0.00198

0.00147

2.06*

0

 

CCR1

10

3

6

2

0.00428

0.00141

-1.88*

-2.13

 

CCR2

10

3

6

3

0.00487

0.00173

-1.68+

-1.42

 

Total

110

12

10

6

0.00996

0.00359

1.17

1.11

 

Avg.

 

2.27

  

0.00266

0.0010

  

Palos Verdes

FR1

10

4

3

1

0.00308

0.00094

-0.9

-5.42**

 

FR2

10

3

14

1

0.02316

0.00601

1.3

-1.07

 

RsPt

10

7

9

0

0.00929

0.00230

0.8

-4.89*

 

PVL

10

3

1

2

0.00071

0.00083

-0.43

-1.6

 

ABR

10

1

0

0

0

0

N/A

N/A

 

AB1

11

5

8

1

0.01003

0.00287

0.22

1.31

 

AB2

11

7

10

2

0.00861

0.00281

-0.98

-0.44

 

AB3

10

8

12

3

0.00859

0.00267

-2**

-3.2*

 

IP

10

5

7

1

0.00559

0.00156

-1.64

-4*

 

RP1

10

6

9

2

0.00996

0.00309

-0.46

-2.76+

 

RP2

10

5

2

3

0.00272

0.00135

0.02

0.71

 

Total

112

47

73

14

0.03399

0.00912

-1.08

-40.3***

 

Avg.

 

4.91

  

0.00743

0.00222

  

La Jolla

SIO

14

3

1

1

0.00051

0.00036

-0.96

0.35

 

LJP1

20

10

9

4

0.00753

0.00265

-0.66

-2.85+

 

LJP2

13

5

11

1

0.00973

0.00263

-0.94

-7.02*

 

LJP3

10

1

0

0

0

0

N/A

N/A

 

LJS

14

6

5

1

0.00299

0.00086

-1.73

-1.09

 

NAUT

13

4

10

0

0.00556

0.00136

-2.09**

-2.39*

 

BR

14

7

11

1

0.01426

0.00361

0.33

-3.47+

 

Total

98

32

37

7

0.0173

0.00457

-0.87

-8.9*

 

Avg.

 

5.14

  

0.00580

0.00164

  

Point Loma

SD

20

7

13

0

0.00793

0.00193

-1.46

-1.21

 

SCL

7

3

2

1

0.00206

0.00076

-1.35

-0.95

 

LS

8

2

1

0

0.00090

0.00022

-1.05

0.21

 

Total

35

12

16

1

0.00787

0.00198

-1.39

-0.88

 

Avg.

 

4.00

  

0.00363

0.00097

  
  1. 1Number of synonymous polymorphisms (syn.) or non-synonymous (nonsyn.)
  2. 2Average number of pairwise differences between sequences within a population for synonymous (Ï€syn), non-synonymous (Ï€non-syn), and all (Ï€total) sites.
  3. 3Tajima's D value with significance indicated by an * (P < 0.05) or an ** (P < 0.01), and + indicating 0.05 < P < 0.1.
  4. 4Fay and Wu's H value with significance indicated by an * (P < 0.05), an ** (P < 0.01), or an *** (P < 0.001), and + indicating 0.05 < P < 0.1.