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Table 1 Individual Delta values (iDV) of the plant individuals.

From: General functions to transform associate data to host data, and their use in phylogenetic inference from sequences with intra-individual variability

 

PBC

FRQ

MIN

MOD

Evolutionary interpretation

Acer section Acer, median iDV

0.217

0.200

0.215

0.214

 

Individual gd 1, group B4, A. saccharum

0.279

0.268

0.255

0.299

Early isolated lineage; maximal iDV (gd with a strong plesiomorphic signal)

Population ni A, group B4, A. saccharum

0.315

0.305

0.328

0.319

 

Individual us11, group B2, A. cf. monspessulanum

0.294

0.310

0.283

0.300

Ancestral within group B2

Individual ib 1, group B2, A. ibericum

0.230

0.198

0.224

0.256

2nd highest iDV in group B2

Individual ms17, group B2, A. monspessulanum

0.188

0.182

0.161

0.168

Minimal iDV, highly diagnostic ITS sequences

Individual xx 5, group B2, A. monspessulanum

0.230

0.198

0.260

0.169

Includes two chimeric clones (B2 × B3)

Fagus, median iDV

0.276

0.255

0.248

0.248

 

Individual lo47, subgenus Fagus: F. longipetiolata

0.379

0.352

0.335

0.337

Maximal iDV, reflecting an ancient ITS polymorphism

Individual lo 2, subgenus Fagus: F. longipetiolata

0.279

0.250

0.272

0.256

Lowest iDV in F. hayatae-longipetiolata

Individual ja25, subgenus Engleriana: F. japonica

0.224

0.194

0.215

0.193

Minimal iDV; all ITS variants of subgenus Engleriana are clearly distinct from ot her Fagus spp.

Zelkova, median iDV

0.172

0.142

0.246

0.228

 

Individual cp 2, Z. carpinifolia

0.237

0.182

0.246

0.265

Ancestral within genus; highest iDV

Individual se 2, Z. cf. serrata (hybrid)

0.160

0.136

0.252

0.300

Genetic hybrid of Z. serrata and Z. schneideriana

   Individual se 5, Z. serrata

0.167

0.142

0.266

0.228

 

   Individual sd 1, Z. schneideriana

0.178

0.155

0.240

0.203

 

Individual sd 3, Z. schneideriana

0.144

0.112

0.201

0.219

Minimal iDV, only species-diagnostic ITS variants

  1. Plant specimens' iDV inferred from distances matrices obtained with four different transformation methods are compared; gaps were treated as missing data and a minimum number of three associates per host was applied. Affiliation to plant species as well as an evolutionary interpretation of particularly high iDV (i.e. low treelikeness) observed is indicated.