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Table 3 Analysis in 21 W-Beijing isolates of the 8 ICDSs of H37Rv strain corresponding to full-length ORFs in W-Beijing strain 210.

From: Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences

 

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Tracking Number

ICDS 0005

ICDS 0011

ICDS 0031

ICDS 0066

ICDS 0067

ICDS 0072

ICDS 0085

ICDS 0094

W-Beijing

W

10648

FL

FL

FL

FL

FL

FL

NT

FL

 

W

565

FL

FL

FL

FL

FL

FL

FL*

FL

 

W4

10775

FL

FL

FL

FL

FL

FL

FL*

FL

 

W14

3617

FL

FL

FL

FL

FL

FL

FL*

FL

 

W26

10270

FL

FL

FL

FL

FL

FL

FL*

FL

 

W69

5418

FL

FL

FL

FL

FL

FL

FL*

FL

 

W88

7052

FL

FL

FL

FL

FL

FL

FL*

FL

 

W130

6707

FL

FL

FL

FL

FL

FL

FL*

FL

 

W148

8561

FL

FL

FL

FL

FL

FL*

FL*

FL

 

W183

7657

FL

FL

FL

FL

FL

FL

NT

FL

 

W215

8963

FL

FL

FL

FL

FL

FL

FL*

FL

 

W342

10644

FL

FL

FL

FL

FL

FL

FL*

FL

Ancestral W-Beijing

N17

3046

FL

FL

FL

FL

FL

FL

FL*

FL

 

LB

8128

FL

FL

FL

FL

FL

FL

FL*

FL

 

AR

12360

FL

FL

FL

FL

FL

FL

FL*

FL

 

AM

4948

FL

FL

FL

FL

FL

FL

FL*

FL

 

CK

6595

FL

FL

FL

FL

FL

FL

FL*

FL

 

CN1

16116

FL

FL

FL

FL

FL

FL

FL*

FL

 

HE7

13454

FL

FL

FL

FL

FL

FL

FL*

FL

 

HI

5116

FL

FL

FL

FL

FL

FL

FL*

FL

 

KY

10583

FL

FL

NT

FL

FL

FL

FL*

FL

AF/H37 lineage

H37Rv

ATCC25618

ICDS

ICDS

ICDS

ICDS

ICDS

ICDS

ICDS

ICDS

M. bovis AF2122/97

  

FL

FL

FL

FL

FL

FL

FL

FL

  1. M. tuberculosis isolates from various lineages for which chromosomal DNA was used as a template for PCR amplification of the selected locus. "FL" indicates the presence of a full-length ORF identical to that in the M. tuberculosis 210 strain, "*" indicates an additional mutation acquired in these isolates with respect to M. tuberculosis H37Rv, "NT", not tested.