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Table 2 List of the 19 ICDSs common to M. tuberculosis H37Rv and CDC1551, the ICDSs common to M. tuberculosis H37Rv and M. bovis AF2122/97 and the ICDSs common to M. tuberculosis CDC1551 and M. bovis AF2122/97

From: Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences

M. tub H37Rv

M. tub CDC1551

M. bovis AF2122/97

M. tub 210

M. africanum

Putative function

Functional classification

0001 (Rv0095c 136 aa)

0003

Mb0098c 260 aa

ICDS

Not Found

Conserved hypothetical

Unknown

0005 (Rv0325 74 aa – Rv0326 151 aa)

0010

Mb0333 229 aa

FL

FL

Hypothetical

Unknown

0011 (Rv0590 275 aa – Rv0590A 84 aa)

0016

Mb0605 343 aa

FL

FL

MCE-family protein

Virulence, detox, adapt

0013 (Rv0618 231 aa – Rv0619 181 aa)

0018

Mb0635 394 aa

ICDS

FL

Galactose-1-phosphate uridylyltransferase

Intermediary metabolism

0022 (Rv0924c 428 aa – Rv0925c 245 aa)

0028

Mb0948c 684 aa

ICDS

ICDS

Manganese transport protein MntH

Cell wall, process

0031 (Rv1145 303 aa – Rv1146 470 aa)

0040

Mb1177 781 aa

FL

FL

Transmembrane transport protein MmpL13

Cell wall, process

0037 (Rv1503c 182 aa – Rv1504c 199 aa)

0048

Mb1542c 382 aa

ICDS

FL

Conserved hypothetical

Unknown

0038 (Rv1549 175 aa – Rv1550 571 aa)

0051

Mb1576 647 aa

ICDS

FL

Fatty-acid-coA ligase FadD11

Lipid metabolism

0039 (Rv1553 247 aa - Rv1554 126 aa)

0052

Mb1579 374 aa

ICDS°

ICDS°

Fumarate reductase

Intermediary metabolism

0045 (Rv1792 59 aa)

0058

Mb1820 98 aa

ICDS

FL

ESAT-6-like protein EsxM

Cell wall, process

0055 (Rv2227 233 aa)

0072

Mb2252 124 aa

ICDS

FL

Conserved hypothetical

Unknown

0066 (Rv2946c 1616 aa – Rv2947 496 aa)

0084

Mb2971c 2112 aa

FL

FL

Polyketide synthase Pks15/1

Lipid metabolism

0067 (Rv2974c 470 aa – Rv2975c 84 aa)

0085

Mb2999c 553 aa

FL

FL

Conserved hypothetical

Unknown

0072 (Rv3233c 196 aa – Rv3234c 271 aa)

0092

Mb3262c 469 aa

FL

FL

Conserved hypothetical

Unknown

0073 (Rv3337 128 aa – Rv3338 214 aa)

0094

Mb3370 297 aa

ICDS

FL

Conserved hypothetical

Unknown

0078 (Rv3373 213 aa – Rv3374 82 aa)

0103

Mb3408 296 aa

ICDS

FL

Enoyl-CoA hydratase EchA18

Lipid metabolism

0085 (Rv3725 309 aa)

0112

Mb3752 333 aa

FL

FL

Oxidoreductase

Intermediary metabolism

0086 (Rv3738c 315 aa – Rv3739c 77 aa)

0113

Not determined

ICDS

ICDS

PPE family protein

PE/PPE

0094 (Rv3897c 210 aa – Rv3898c 110 aa)

0121

Mb3927c 329 aa

FL

FL

Conserved hypothetical

Unknown

M. tub H37Rv

M. bovis AF2122/97

M. tub CDC1551

M. tub 210

M. africanum

Putative function

Functional classification

0118 (Rv3784 326 aa – Rv3785 357 aa)

0128

MT3893 712 aa

NT

ICDS

NAD-dependent epimerase/dehydratase

Information pathway

M. tub CDC1551

M. bovis AF2122/97

M. tub H37Rv

M. tub 210

M. africanum

Putative function

Functional classification

0057 (MT1806 820 aa – MT1807 94 aa)

0046

Rv1759c 914 aa

NT

NT

PE_PGRS family protein

PE/PPE

  1. List of the 19 ICDSs common to M. tuberculosis H37Rv and CDC1551, the ICDSs common to M. tuberculosis H37Rv and M. bovis AF2122/97 and the ICDSs common to M. tuberculosis CDC1551 and M. bovis AF2122/97. ICDS number (variable, according to strain), the size of the predicted protein and its putative function are indicated. The genes that do not contain a frameshift in either M. tuberculosis strain 210 and in M. africanum and that correspond to a full-length ORF are noted "FL". "NT", not tested.