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Table 6 Minisequencing primers used to analyze the 25 X-chromosome SNPs

From: X-chromosome SNP analyses in 11 human Mediterranean populations show a high overall genetic homogeneity except in North-west Africans (Moroccans)

CODE

SIZE (bp)

SNP

ORIENTATION

PRIMERS

X047

18

C/T

Reverse

GTTGACATTAGGTTGCT

X108

25

G/T

Reverse

aGTGGTTATGTAAGATTTTAGCAT

X142

25

A/C

Reverse

aATCCATTGTTCATTTCAAGGTAT

X135

29

G/T

Forward

ATTTTAAAATATGCAAAGACCTTTATCT

X036

33

C/T

Reverse

agtctgacaaAGTTGTAGAGCTCAGATTGTAA

X159

33

A/G

Forward

tgacaaACTAAAGTGGAAATAAATAGCTTTTG

X131

37

G/T

Forward

agtctgacaaTTAGTATTAAACATGATTTAGCGCAT

X175

37

A/C

Reverse

tcgtgaaagtctgacaaCTCCACATCTTCAAAACCT

X018

41

C/T

Reverse

cacgtcgtgaaagtctgacaaCAAGACCAAACATTGCAAG

X062

41

A/G

Reverse

gtcgtgaaagtctgacaaATGCTGATGACTTGATTTCATT

X121

45

A/G

Reverse

ccacgtcgtgaaagtctgacaaAAGACATCTGATAAGACCTTTG

X046

45

C/T

Reverse

cacgtcgtgaaagtctgacaaTTTACCTGTGCTCGTAAATTTCT

X076

49

C/T

Forward

ctaggtgccacgtcgtgaaagtctgacaaACAGATCATACAAGCACCA

X122

49

A/G

Forward

ctaggtgccacgtcgtgaaagtctgacaaGGAAGACCAAAAACAAACA

X004

53

C/T

Reverse

aactaggtgccacgtcgtgaaagtctgacaaTAGAAAGCAGTCTGTGGAACA

X168

53

A/G

Forward

ctaaactaggtgccacgtcgtgaaagtctgacaaGAAATCCGACAAAGCAAT

X165

57

C/G

Reverse

ctaggtgccacgtcgtgaaagtctgacaaCTTAACTGATAACCAAGTCATTTGTAT

X056

61

A/G

Reverse

tcaactgactaaactaggtgccacgtcgtgaaagtctgacaaCCAGGGACCCAAACTCTT

X059

65

C/T

Reverse

ctcaactgactaaactaggtgccacgtcgtgaaagtctgacaaGAAAGCCTTCATGCTGCAATG

X109

69

A/G

Reverse

tctctctcaactgactaaactaggtgccacgtcgtgaaagtctgacaaCATGCCTATGAATAGACCAA

X134

73

G/T

Forward

tctctctctcaactgactaaactaggtgccacgtcgtgaaagtctgacaaAAGAGCTATAAGAGCTGAGATC

X143

73

A/C

Reverse

ctctctctcaactgactaaactaggtgccacgtcgtgaaagtctgacATAAGATTAATAGTTTCAGGCACTG

X029

77

A/G

Forward

ctctctctctctctctcaactgactaaactaggtgccacgtcgtgaaagtctgacaaATTGGTTCTTCAGTCCCTC

X085

81

A/G

Reverse

tctctctctctctctctctcaactgactaaactaggtgccacgtcgtgaaagtctgacaaAGGAAAATGAGGATACCAAG

X009

85

A/G

Reverse

tctctctctctctctctctcaactgactaaactaggtgccacgtcgtgaaagtctgacaTGTTTCCAGAAGACCTAGTATTTTG

  1. Lower case letters: Neutral sequence tail.
  2. Upper case letters: Target-specific sequence.