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Table 6 Oligonucleotide primers used for RT-PCR analyses and sequencing

From: A genomic view of the NOD-like receptor family in teleost fish: identification of a novel NLR subfamily in zebrafish

Target

Primer name

Sequence 5'-3'

NLR-A1

ZF-NOD1ex-F1

TTA ACG ATT ATG GCG TGA AGC

 

ZF-NOD1ex-R1

GAA CCT CAA TAC CGC TGT CTG

NLR-A2

ZF-NOD2ex-F1

TGG ATG TTG AGC ACC TGA AG

 

ZF-NOD2ex-R1

CCC TTT TCC AGA AGT TTT CG

NLR-A3

ZF-NOD3ex-F1

TCT GTG CTG TTC TCG CCT ATT

 

ZF-NOD3ex-R1

ACT CAG CAG ACT TCC CAA CAG

NLR-A4

ZF-NOD4ex-F1

AAA CTG GCA AAG GCT ATT GGT

 

ZF-NOD4ex-R1

CAG GAT ACC GCA CAA AGT CTC

NLR-A5

ZF-NOD5ex-F1

TGA ATG AGC TGA ACC TGT CCT

 

ZF-NOD5ex-R1

TCA GCC GCT GTA GAG AGT GAT

NLR-B2

NLRB FI

CAG ATC AAA GTG TGC AGC AGG TTC

 

NLRB RI

TTG TGG AAC GAC TCT GTG AAG CTC

NLR-C

NLRC-F

GAA GAG GAT TAC AGC AGG ACT

 

NLRC-R

TCT CCA CTG CAG TCA ATC TC

ARP

ZF ARP 35F

TTA AAC CGG CTG TTC ACC GAT CCT

 

ZF ARP 271R

CGA ATG GCC TTC CTC ATC ATG GTG TT

EST-CK126487

ZF-EST487-F1

GTC TAC AGC TTC ATC CAT CT

 

ZF-EST487-R1

ACA GAC TGA ATG ATT CTC TCA

 

ZF-EST487-F2

AGC TCT GCT ACA GGA CTG T

 

ZF-EST487-R2

CTC ATT ACT GAT CAA CTG AAC A

 

ZF-EST487-F3

CCT CAA TCT GTG CCC T

 

ZF-EST487-R3

CGG AGT AAA GCT GCT A