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Table 5 NLR subfamily genes identified in other non-mammalian genomes

From: A genomic view of the NOD-like receptor family in teleost fish: identification of a novel NLR subfamily in zebrafish

Genome

Chromosome

Nickname

Closest ortholog

Identifier

Effector domain

Gallus gallus

Chr 2

GG-NOD1

NOD1

ENSGALG00000011535

CARDa

 

Chr 14

GG-NOD3

NOD3

XM_414969

CARDb

 

Chr 11

GG-NOD4

NOD4

XM_414012

?

 

Chr 24

GG-NOD5

NOD5

XM_417893

?

 

Chr 5

GG-NALP

NALP3

Q5F3J4

PYRIN

Xenopus tropicalis

Scaff 320

XT-NOD1

NOD1

ENSXETG00000022012

CARDa

 

Scaff 27

XT-NOD3

NOD3

GENSCAN00000015124

CARDb

 

Scaff 112

XT-NOD4

NOD4

AC157698

?

 

Scaff 124

XT-NOD5

NOD5

ENSXETG00000021586

?

 

Scaff 279

XT-NALPa

NALP6

scaffold_279.46c

?

 

Scaff 1247

XT-NALPb

NALP6

scaffold_1247.5

?

 

Scaff 3599

XT-NALPc

NALP6

scaffold_3599.1

?

 

Scaff 626

XT-NALPd

NALP6

scaffold_626.23

?

 

Scaff 279

XT-NALPe

NALP6

scaffold_279.46c

?

 

Scaff 626

XT-NALPf

NALP6

scaffold_626.24

?

 

Scaff 626

XT-NALPg

NALP6

scaffold_626.25

?

 

Scaff 279

XT-NALPh

NALP6

scaffold_279.46c

?

 

Scaff 279

XT-NALPi

NALP6

scaffold_279.46c

?

 

Scaff 111

XT-NALPj

NALP6

scaffold_111.48

?

 

Scaff_74

XT-IPAF

IPAF

ENSXETG00000018490

CARD

Fugu rubripes (v4)

Scaff 58

FR-NOD1

NLR7.1

NEWSINFRUG00000144256

CARDa

 

Scaff 28

FR-NOD2

NLR16.3

NEWSINFRUG00000134206

CARDb

 

Scaff 3

FR-NOD3

NLR16.2

NEWSINFRUG00000138086

CARDb

 

Scaff 140

FR-NOD4

NLR16.1

GENSCANSLICE00000000561

?

 

Scaff 144

FR-NOD5

NLR11.3

NEWSINFRUG00000148012

?

  1. a Identified using the Conserved Domain Database,
  2. b Based on similarity to human ortholog,
  3. c Xenopus gene prediction scaffold_279.46 contains NACHT domains from multiple NLRs.