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Table 4 NLR-SUBFAMILY C in zebrafish (selected examples)

From: A genomic view of the NOD-like receptor family in teleost fish: identification of a novel NLR subfamily in zebrafish

Chromosome

Location (m)

Nickname

ENSEMBL prediction ID (ENSDARG000000)

REFSEQ ID

Domains identified a

3

61.59

NLR-C1

 

XP_692844

X-N-L-B

 

69.38

NLR-C2

52239

 

P-N

4

15.14

NLR-C3

57488

XP_688571

P-N-L

 

37.15

NLR-C4

54997

 

P-N

 

39.60

NLR-C5

54809

 

P-N

 

39.94

NLR-C6

54769

 

P-N

 

43.16

NLR-C7

54521

XP_689993

P-N-L

 

43.36

NLR-C8

54506

 

P-N

 

44.06

NLR-C9

 

XP_698595

 
 

44.97

NLR-C10

54412

 

N

 

45.05

NLR-C11

 

XP_692726

X-N-L-B

 

45.10

NLR-C12

54393

 

P-N

5

26.20

NLR-C13

56022

 

P-N

 

45.15

NLR-C14

53289

 

P-N

6

39.57

NLR-C15

53299

 

P-N

7

83.86

NLR-C16

51797

 

P-N

8

18.11

NLR-C17

57564

 

P-N

9

48.99

NLR-C18

 

XP_686111

X-N-L

12

50.04

NLR-C19

52946

 

P-N

 

54.00

NLR-C20

52760

XP_686816

P-N-L

 

54.59

NLR-C21

52752

XP_689021

P-N-L

13

51.64

NLR-C22

52785

 

P-N

 

51.86

NLR-C23

52776

 

P-N

14

37.23

NLR-C24

55661

 

P-N

 

38.47

NLR-C25

55600

XP_693637

P-N-L

 

38.57

NLR-C26

55597

 

P-N

 

39.22

NLR-C27

 

XP_694145

X-N-L-B

 

44.07

NLR-C28

 

XP_693652

X-N-L

 

49.77

NLR-C29

54752

 

P-N

 

52.05

NLR-C30

54465

 

P-N

 

56.87

NLR-C31

 

XP_691478

N

 

59.74

NLR-C32

53860

 

P-N

 

60.05

NLR-C33

53848

XP_689023

P-N-L-B

 

62.17

NLR-C34

53740

 

P-N

 

69.67

NLR-C35

53051

XP_698503

P-N

17

8.51

NLR-C36

 

XP_690676

X-N-L-B

 

9.80

NLR-C37

 

XP_689954

X-N-L-B

18

32.54

NLR-C38

56197

XP_693868

P-N-L

20

7.77

NLR-C39

43785

 

P-N

21

54.16

NLR-C40

52974

 

P-N

22

34.79

NLR-C41

55030

 

P-N

 

35.49

NLR-C42

55004

 

P-N

 

35.68

NLR-C43

54977

 

P-N

 

47.49

NLR-C44

 

XP_688350

X-N-L-B

 

96.65

NLR-C45

 

XP_697815

N

23

43.12

NLR-C46

54149

XP_687258

P-N-L

 

44.18

NLR-C47

 

XP_690327

X-N-L-B

 

47.00

NLR-C48

39900

 

N

Scaff 3690

480.02k

NLR-C49

53964

 

P-N

Scaff 3699

44.42k

NLR-C50

 

XP_687591

X-P-N-B

Scaff 3707

166.18k

NLR-C51

58788

 

P-N

Scaff 3711

372.30k

NLR-C52

55202

 

P-N

 

638.24k

NLR-C53

55178

XP_691896

P-N-L-B

Scaff 3717

151.33k

NLR-C54

55023

 

P-N

Unknown

 

NLR-C55

 

XP_689864

X-N-L-B

Unknown

 

NLR-C56

 

XP_690860

X-N-L-B

Unknown

 

NLR-C57

 

XP_694605

X-N-L-B

Unknown

 

NLR-C58

 

XP_694871

X-N-L-B

Unknown

 

NLR-C59

 

XP_696432

X-N-L-B

Unknown

 

NLR-C60

 

XP_698814

X-N-L-B

Unknown

 

NLR-C61

 

XP_699128

P-N-L-B

Unknown

 

NLR-C62

 

XP_697396

N-L

  1. a P = PYRIN, N = NACHT, L = LRR, X = unknown effector domain