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Table 2 Transmembrane domain inter-loop length (amino-acids)

From: Identification of the Otopetrin Domain, a conserved domain in vertebrate otopetrins and invertebrate otopetrin-like family members

 

NH2 (I)

L1 (O)

L2 (I)

L3 (O)

L4 (I)

L5 (O)

L6 (I)

L7 (O)

L8 (I)

L9 (O)

L10 (I)

L11 (O)

COOH (I)

Mouse Otop1

58#

12#

23

10

11

50

21

9

19

11

85

16

13#

Rat Otop1

58

12

23

10

11

50

21

9

19

11

85

16

13

Human OTOP1

61

12

23

10

11

50

21

9

19

11

95

16

13

Chimp Otop1

61

12

23

10

11

50

21

9

19

11

95

16

13

Rhesus Otop1

61

12

23

10

11

50

21

9

19

11

93

16

13

Chicken Otop1

11*

12

23

10

11

50

21

9

19

11

98

16

13

X. tropicalis Otop1

39

12

23

10

11

47

21

9

19

11

96

16

13

Zebrafish Otop1

54

12

23

10

11

47

22

9

19

11

75

16

13

Medaka Otop1

52

12

23

10

11

49

22

9

19

11

73

16

13

Stickleback Otop1

51

12

24

10

11

47

22

9

19

11

87

16

13

Fugu Otop1

51

12

23

10

11

47

22

9

19

11

87

16

13

Tetraodon Otop1

50

12

23

10

11

47

22

9

19

11

87

16

12

Mouse Otop2

30

12

23

10

11

54

26

9

19

11

67

16

13

Rat Otop2

30

12

23

10

11

54

26

9

19

11

67

16

13

Human OTOP2

30

12

23

10

11

53

26

9

19

11

67

16

13

Chimp Otop2

30

12

23

10

11

53

26

9

19

11

67

16

13

Dog Otop2

30

12

23

10

11

53

26

9

19

11

67

16

13

Cow Otop2

30

12

23

10

11

53

26

9

19

11

67

16

13

Armadillo Otop2

30

12

23

10

11

53

26

9

19

11

67

16

13

Opossum Otop2

30

12

23

10

11

46

32

6

19

11

65

16

13

X. tropicalis Otop2

31*

12

22

10

11

54

25

8

19

11

62

16

13

Stickleback Otop2

31*

12

23

10

11

52

20

12

19

11

64

16

13

Mouse Otop3

70

12

23

10

11

44

24

8

19

11

54

16

13

Rat Otop3

71

12

23

10

11

44

24

8

19

11

54

16

13

Human OTOP3

89

12

23

10

11

44

24

8

19

11

54

16

13

Dog Otop3

71

12

23

10

11

44

24

8

19

11

54

16

13

Opossum Otop3

59*

12

23

10

11

44

24

8

19

11

58

16

13

Platypus Otop3

51*

12

23

10

11

44

24

8

19

11

51

16

13

Chicken Otop3

24

12

23

10

11

44

23

8

19

11

62

16

13

X. tropicalis Otop3

34

12

23

10

11

43

22

8

19

11

46

16

13

Stickleback Otop3

48

12

23

10

11

45

28

8

19

11

60

16

13

Fugu Otop3

1*

12

23

10

11

45

27

8

19

11

44

16

11

D. melanogaster OTOPLa

64

14

79

13

11

337

43

8

15

9

14

16

19

A. gambiae OTOPLa

65

14

69

13

11

264

43

8

15

9

14

16

19

A. mellifera. OTOPLa

73

14

74

13

11

202

44

8

15

9

14

16

19

T. castaneum OTOPLa

65

14

79

13

11

148

42

8

15

9

14

16

19

D. melanogaster OTOPLb

76

14

26

13

12

94

34

8

20

10

14

16

19

D. pseudoobscura OTOPLb

76

14

26

13

12

94

34

8

20

10

14

16

19

A. gambiae OTOPLb1

26

14

28

13

12

91

37

8

21

10

14

16

22

A. aegypti OTOPLb1

197

14

26

13

12

87

37

8

21

10

14

16

22

T. castaneum OTOPLb

106

14

34

14

12

43

35

13

21

7

14

16

31

A. gambiae OTOPLb2

163

14

32

13

12

60

41

8

19

7

14

16

21

A. aegypti OTOPLb2

157

14

29

13

13

75

35

8

18

10

14

16

21

D. melanogaster OTOPLc

0*

14

60

13

12

73

34

8

15

7

14

16

115

D. pseudoobscura OTOPLc

0*

14

59

13

12

74

34

8

15

7

14

16

90

A. gambiae OTOPLc

7*

14

70

13

12

70

33

8

15

7

14

16

21

A. aegypti OTOPLc

10

14

68

13

12

70

33

8

15

7

14

16

21

A. mellifera OTOPLc

90

14

46

13

12

74

37

8

15

7

14

16

21

T. castaneum OTOPLc

177

14

50

13

12

79

33

8

15

7

14

16

21

C. elegans OTOPLd1

38

14

31

9

11

59

25

7

16

10

14

13

36

C. briggsae OTOPLd

47

14

34

9

11

59

25

7

16

10

14

13

37

C. elegans OTOPLd2

55

14

34

9

11

59

25

7

16

10

12

13

38

C. elegans OTOPLe

50

14

36

9

11

69

22

7

16

11

14

13

34

C. briggsae OTOPLe

42

14

36

9

11

67

22

7

16

11

14

13

37

C. elegans OTOPLf

65

14

35

9

11

93

25

7

16

10

14

13

38

C. briggsae OTOPLf

71

14

36

9

11

99

25

7

16

10

14

13

48

C. elegans OTOPLg

64

13

34

9

11

72

26

7

16

11

14

13

53

C. briggsae OTOPLg

64

13

34

9

11

73

26

7

16

11

14

13

55

C. elegans OTOPLh

56

17

81

9

11

75

25

7

22

11

13

16

34

C. briggsae OTOPLh

66

17

47

9

11

70

25

7

22

11

13

16

34

C. elegans OTOPLi

51

18

29

14

11

46

27

5

22

10

16

16

30

C. briggsae OTOPLi

51

18

30

14

11

48

27

5

22

10

16

16

30

Average

62.4

13.2

33.7

10.8

11.2

70.5

27.6

8.1

18.2

10.2

43.1

15.6

23.2

SD

37.3

1.5

17.0

1.6

0.5

50.2

6.5

1.2

2.0

1.4

30.6

1.1

18.3

  1. #Number of amino-acid residues within the N-terminal, interloop, and C-terminal domains. (I), inner loop; (O), outer loop; SD, standard deviation.* Incomplete N-terminal sequence data were excluded from N-terminal loop length calculations.
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BMC Ecology and Evolution

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