(A) Rationally defined alphabets | |||
---|---|---|---|
Alphabet Identifier | States | Â | Â |
CHARGE_2 | KRDE;ACFGHILMNPQSTVWY | Â | Â |
CHARGE_HIS_2 | KRDEH;ACFGILMNPPQSTVWY | Â | Â |
CHARGE_3 | KR;DE;ACFGHILMNPQSTVWY | Â | Â |
CHARGE_HIS_3 | KRH;DE;ACFGILMNPQSTVWY | Â | Â |
SIZE_2 | GAVLISPTCND;MFYWQKHRE | Â | Â |
POLARITY_HIS_4 | DE;RHK;AILMFPWV;GSTCYNQ | Â | Â |
HYDROPATHY_3 | RKDENQH;YWSTG;PAMCFLVI | Â | Â |
(B) Heuristically defined 'Atchley-factor' alphabets | |||
Alphabet Identifier | States | Alphabet Identifier | States |
A1_2 | CVILFMWAGS;TPYHQNDERK | A1_3 | CVILFMW;AGSTPY;HQNDERK |
A1_4 | CVILF;MWAGS;TPYHQ;NDERK | A1_5 | CVIL;FMWA;GSTP;YHQN;DERK |
A1_6 | CVI;LFMW;AGS;TPY;HQND;ERK | A1_7 | CVI;LFM;WAG;ST;PYH;QND;ERK |
A1_8 | CVI;LF;MWA;GS;TPY;HQ;NDE;RK | A1_9 | CV;IL;FMW;AG;ST;PY;HQN;DE;RK |
A1_10 | CV;IL;FM;WA;GS;TP;YH;QN;DE;RK | Â | Â |
A2_2 | MEALFKIHVQ;RWDTCNYSGP | A2_3 | MEALFKI;HVQRWD;TCNYSGP |
A2_4 | MEALF;KIHVQ;RWDTC;NYSGP | A2_5 | MEAL;FKIH;VQRW;DTCN;YSGP |
A2_6 | MEA;LFKI;HVQ;RWD;TCNY;SGP | A2_7 | MEA;LFK;IHV;QR;WDT;CNY;SGP |
A2_8 | MEA;LF;KIH;VQ;RWD;TC;NYS;GP | A2_9 | ME;AL;FKI;HV;QR;WD;TCN;YS;GP |
A2_10 | ME;AL;FK;IH;VQ;RW;DT;CN;YS;GP | Â | Â |
A3_2 | SDQHPLCAVK;WNGERFITMY | A3_3 | SDQHPLC;AVKWNG;ERFITMY |
A3_4 | SDQHP;LCAVK;WNGER;FITMY | A3_5 | SDQH;PLCA;VKWN;GERF;ITMY |
A3_6 | SDQ;HPLC;AVK;WNG;ERFI;TMY | A3_7 | SDQ;HPL;CAV;KW;NGE;RFI;TMY |
A3_8 | SDQ;HP;LCA;VK;WNG;ER;FIT;MY | A3_9 | SD;QH;PLC;AV;KW;NG;ERF;IT;MY |
A3_10 | SD;QH;PL;CA;VK;WN;GE;RF;IT;MY | Â | Â |
A4_2 | WHCMYQFKDN;EIPRSTGVLA | A4_3 | WHCMYQF;KDNEIP;RSTGVLA |
A4_4 | WHCMY;QFKDN;EIPRS;TGVLA | A4_5 | WHCM;YQFK;DNEI;PRST;GVLA |
A4_6 | WHC;MYQF;KDN;EIP;RSTG;VLA | A4_7 | WHC;MYQ;FKD;NE;IPR;STG;VLA |
A4_8 | WHC;MY;QFK;DN;EIP;RS;TGV;LA | A4_9 | WH;CM;YQF;KD;NE;IP;RST;GV;LA |
A4_10 | WH;CM;YQ;FK;DN;EI;PR;ST;GV;LA | Â | Â |
A5_2 | DSQPVLECWA;HFINMTYKGR | A5_3 | DSQPVLE;CWAHFI;NMTYKGR |
A5_4 | DSQPV;LECWA;HFINM;TYKGR | A5_5 | DSQP;VLEC;WAHF;INMT;YKGR |
A5_6 | DSQ;PVLE;CWA;HFI;NMTY;KGR | A5_7 | DSQ;PVL;ECW;AH;FIN;MTY;KGR |
A5_8 | DSQ;PV;LEC;WA;HFI;NM;TYK;GR | A5_9 | DS;QP;VLE;CW;AH;FI;NMT;YK;GR |
A5_10 | DS;QP;VL;EC;WA;HF;IN;MT;YK;GR | Â | Â |