|  | ATOpt | ATNopt | AT | GCOpt | GCNopt | GC | All |
---|
(1)
|
MFE
| 0.511 NS | 0.542 NS | 0.600 NS | 0.488 NS | 0.296 NS | 0.414 NS | 0.481 NS |
 |
Mc
| 0.567 NS | 0.528 NS | 0.546 NS | 0.544** | 0.327* | 0.458** | 0.505 NS |
(2)
|
MFE
| 0.255 NS | 0.201 NS | 0.232 NS | 0.140 NS | 0.257 NS | 0.213 NS | 0.225 NS |
 |
Mc
| 0.255 NS | 0.230 NS | 0.238 NS | 0.264 NS | 0.167 NS | 0.222 NS | 0.232 NS |
- Looking at S. cerevisiae and S. paravensis , I compare numbers of each codon in S. cerevisiae being either synonymous non-conserved or conserved at paired or unpaired sites. Structure prediction is based on RNAfold upon the S. cerevisiae sequence using MFE and McCaskill's (Mc) algorithm. Mantel Haenzsel estimators and significances are presented. WMH<1 = lower numbers of synonymous substitutions at paired sites. (1) All genes, (2) Genes that are shorter than 800 bp.
- * < 0.05, ** < 0.01, *** < 0.005, NS = not significant