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Table 1 Hmmer search in Nr.db from NCBI using the CIDE-N motif pfam02017

From: Molecular evolution of Cide family proteins: Novel domain formation in early vertebrates and the subsequent divergence

Organism/Protein Found

Cidea

Cideb

Cidec

Dffa Related

Dffb Related

Drep1* Related

Drep2* Related

Drep3* Related

Drep4* Related

Homo sapiens (human)

1

1

1

1

1

    

Pan troglodytes

1

 

1

1

1

    

Pongo pygmaeus

   

1

     

Macaca mulatta

1

 

1

1

1

    

Mus musculus (mouse)

1

1

1

1

1

    

Rattus norvegicus

1

1

1

1

1

    

Equus caballus

1

1

1

1

     

Bos Taurus

1

1

1

1

1

    

Sus scrofa

1

1

1

      

Canis lupus familiaris

1

1

1

1

1

    

Monodelphis domestica

 

1

1

1

1

    

Ornithorhynchus anatinus

1

 

1

1

1

    

Gallus gallus (chicken)

1

  

1

1

    

Xenopus laevis

1

1

1

      

Xenopus tropicalis (X.tropicalis)

1

1

1

1

     

Danio rerio (zebrafish)

1

1

1

1

1

    

Tetraodon nigroviridis (tetraodon)

 

1

1

1

1

    

Aedes aegypti

     

1

1

 

1

Anopheles gambiae str. PEST

      

1

 

1

Culex pipiens quinquefasciatus

     

1

1

 

1

Drosophila melanogaster (fruit fly)

     

1

1

1

1

Drosophila pseudoobscura

     

1

1

1

1

Bombyx mori

     

1

   

Apis mellifera

     

1

1

  

Tribolium castaneum

      

1

 

1

  1. Total Cide Protein Found 41
  2. Total Dff Related Protein Found 48
  3. * Drep1 is Dffa in fruit fly, and Drep4 is Dffb in fruit fly.
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BMC Ecology and Evolution

ISSN: 2730-7182

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