Table 1 Species and Genbank accession numbers [46] of opsin nucleotide sequences and deduced amino acids used in phylogenetic analyses.
From: Visual pigments in a living fossil, the Australian lungfish Neoceratodus forsteri
Opsin | Common name reference in Fig. 3 | Species | Genbank accession number |
|---|---|---|---|
Invertebrate Rh4 | Fruit Fly | Drosophila melanogaster | NM_057353 |
Rh1 | Common frog | Rana temporaria | U59920 |
| Â | Salamander | Ambystoma tigrinum | U36574 |
| Â | Lungfish | Neoceratodus forsteri | EF526295 |
| Â | Coelacanth | Latimeria chalumnae | AF131253 |
| Â | Cavefish | Astyanax fasciatus | U12328 |
| Â | Goldfish | Carassius auratus | L11863 |
Rh2 | Green anole | Anolis carolinensis | AF134189 |
| Â | Italian wall lizard | Podarcis sicula | AY941829 |
| Â | Lungfish | Neoceratodus forsteri | EF526296 |
| Â | Coelacanth | Latimeria chalumnae | AF131258 |
| Â | Cavefish | Astyanax fasciatus | AH004622 |
| Â | Goldfish | Carassius auratus | L11865 |
SWS2 | Salamander | Ambystoma tigrinum | AF038946 |
| Â | Bullfrog | Rana catesbiana | AB010085 |
| Â | Lungfish | Neoceratodus forsteri | EF526299 |
| Â | Goldfish | Carassius auratus | L11864 |
| Â | Cavefish | Astyanax fasciatus | AH007939 |
SWS1 | Green anole | Anolis carolinensis | AF134192 |
| Â | Salamander | Ambystoma tigrinum | AF038948 |
| Â | Lungfish | Neoceratodus forsteri | EF526298 |
| Â | Goldfish | Carassius auratus | D85863 |
| Â | Bluefin killifish | Lucania goodei | AY296735 |
LWS | African clawed frog | Xenopus laevis | U90895 |
| Â | Salamander | Ambystoma tigrinum | AF038947 |
| Â | Lungfish | Neoceratodus forsteri | EF526297 |
| Â | Goldfish | Carassius auratus | L11867 |
| Â | Zebrafish | Danio rerio | NM_001002443 |
| Â | Lamprey | Geotria australis | AY366491 |