Table 3 Accession numbers and species identification for taxa in SWS1 data set
From: Short-wavelength sensitive opsin (SWS1) as a new marker for vertebrate phylogenetics
Class (order) | Common Name | Scientific name | Accession # |
|---|---|---|---|
Actinopterygii | Â | Â | Â |
   Cyprinodontiformes | killifish | Lucania goodei | AY296735 |
   Perciformes | Malawi eye-biter | Dimidiochromis compressiceps | AF191220 |
| Â | Fuelleborn's cichlid | Labeotropheus fuelleborni | AF191223 |
| Â | zebra mbuna | Metriaclima zebra | AF191219 |
| Â | Nile tilapia | Oreochromis niloticus | AF191221 |
   Pleuronectiformes | Atlantic halibut | Hippoglossus hippoglossus | AF156264 |
   Cypriniformes | goldfish | Carassius auratus | D85863 |
| Â | carp | Cyprinus carpio | AB113669 |
| Â | zebrafish | Danio rerio | AB087810 |
   Osmeriformes | smelt | Plecoglossus altivelis | AB098706 |
   Salmoniformes | pink salmon | Oncorhynchus gorbuscha | AY214153 |
| Â | chum salmon | Oncorhynchus keta | AY214143 |
| Â | coho salmon | Oncorhynchus kisutch | AY214148 |
| Â | rainbow trout | Oncorhynchus mykiss | AF425074 |
| Â | sockeye salmon | Oncorhynchus nerka | AY214158 |
| Â | chinook salmon | Oncorhynchus tshawytscha | AY214138 |
| Â | Atlantic salmon | Salmo salar | AY214133 |
Amphibia | Â | Â | Â |
   Anura | African clawed frog | Xenopus laevis | BC084882 |
| Â | American bullfrog | Rana catesbeiana | AB001983 |
   Caudata | tiger salamander | Ambystoma tigrinum | AF038948 |
| Â | firebelly newt | Cynops pyrrhogaster | AB052889 |
Aves | Â | Â | Â |
   Galliformes | chicken | Gallus gallus | NM_205438 |
   Ciconiiformes | Humboldts penguin | Spheniscus humboldti | AJ277991 |
   Columbiformes | pigeon | Columba livia | AJ238856 |
   Psittaciformes | budgerigar | Melopsittacus undulatus | Y11787 |
   Passeriformes | common canary | Serinus canaria | AJ277922 |
| Â | Siberian rubythroat | Luscinia calliope | AY274226 |
| Â | bluethroat | Luscinia svecica | AY274225 |
| Â | blue tit | Parus caeruleus | AY274220 |
| Â | great tit | Parus major | AY274221 |
| Â | marsh tit | Parus palustris | AY274222 |
| Â | yellow crowned bishop | Euplectes afer | AY274223 |
| Â | red bishop | Euplectes orix | AY274224 |
| Â | zebra finch | Taenopygia guttata | AF222331 |
Mammalia | Â | Â | Â |
   Artiodactyla | cow | Bos taurus | U92557 |
| Â | pig | Sus scrofa | NM_214090 |
   Carnivora | dog | Canis familiaris | XM_539386 |
   Primates | white-tufted-ear marmoset | Callithrix jacchus | L76201 |
| Â | mantled howler monkey | Alouatta palliata | AH005790 |
| Â | weeping capuchin monkey | Cebus olivaceus | AH005810 |
| Â | Bolivian squirrel monkey | Saimiri boliviensis | U53875 |
| Â | crab-eating macaque | Macaca fascicularis | AF158977 |
| Â | talapoin | Miopithecus talapoin | L76226 |
| Â | gorilla | Gorilla gorilla | AH005811 |
| Â | human | Homo sapiens | AH003620 |
| Â | chimpanzee | Pan troglodytes | AH005813 |
| Â | brown lemur | Eulemur fulvus | AB111464 |
| Â | western tarsier | Tarsius bancanus | AB111463 |
   Proboscidea | African elephant | Loxodonta africana | AY686753 |
   Rodentia | guinea pig | Cavia porcellus | AY552608 |
| Â | Djungarian hamster | Phodopus sungorus | AY029604 |
| Â | house mouse | Mus musculus | AH005191 |
| Â | Norway rat | Rattus norvegicus | AF051163 |
   Sirenia | Caribbean manatee | Trichechus manatus | AY228443 |
   Dasyuromorpha | dunnart | Sminthopsis crassicaudata | AY442173 |
   Peramelemorpha | short nosed bandicoot | Isoodon obesulus | AY726544 |
   Diprotodontia | tammar wallaby | Macropus eugenii | AY286017 |
| Â | quokka | Setonix brachyurus | AY726545 |
Squamata | Â | Â | Â |
| Â | tokay gecko | Gekko gecko | AY024356 |
| Â | day gecko | Phelsuma madagascariensis | AF074045 |
| Â | green anole | Anolis carolinensis | AH007736 |
Cephalaspidomorphi | Â | Â | Â |
   Petromyzontiformes | pouched lamprey | Geotria australis | AY366495 |