Table 2 Data describing nucleotide substitution patterns within the conserved regions of the homing endonuclease domains of pairs of full-length PRP8 inteins. Sd is the number of observed synonymous substitutions; Nd is the number of observed non-synonymous substitutions; S is the number of potential synonymous substitutions; N is the number of potential non synonymous substitutions; pS is the proportion of observed synonymous substitutions; pN is the proportion of observed non-synonymous substitutions; dS is the Jukes-Cantor correction for multiple hits of pS; dN is the Jukes-Cantor correction for multiple hits of pN. Inteins are identified using strain names as shown in Table 1.
From: The distribution and evolutionary history of the PRP8 intein
Seq1 | Seq2 | Sd | Nd | S | N | pS | pN | dS | dN | dS/dN |
|---|---|---|---|---|---|---|---|---|---|---|
Hca186AR | Hca217B | 2.00 | 1.00 | 47.17 | 165.83 | 0.04 | 0.01 | 0.04 | 0.01 | 7.21 |
Hca186AR | BciPRP8 | 31.62 | 40.38 | 47.17 | 165.83 | 0.67 | 0.24 | 1.68 | 0.29 | 5.72 |
Hca186AR | PbrPRP8 | 36.00 | 32.00 | 48.67 | 164.33 | 0.74 | 0.19 | 3.22 | 0.23 | 14.27 |
Hca186AR | AniPRP8 | 41.88 | 38.12 | 46.50 | 166.50 | 0.90 | 0.23 | NA | 0.27 | NA |
Hca186AR | Afu0163 | 38.12 | 35.88 | 48.67 | 164.33 | 0.78 | 0.22 | NA | 0.26 | NA |
Hca186AR | Afu5109 | 38.12 | 36.88 | 48.33 | 164.67 | 0.79 | 0.22 | NA | 0.27 | NA |
Hca186AR | Nfi0181 | 36.38 | 33.62 | 48.33 | 164.67 | 0.75 | 0.20 | NA | 0.24 | NA |
Hca186AR | ClaPRP8 | 39.75 | 62.25 | 48.67 | 161.33 | 0.82 | 0.39 | NA | 0.54 | NA |
Hca217B | BciPRP8 | 31.12 | 39.88 | 47.67 | 165.33 | 0.65 | 0.24 | 1.53 | 0.29 | 5.27 |
Hca217B | PbrPRP8 | 35.50 | 31.50 | 49.17 | 163.83 | 0.72 | 0.19 | 2.47 | 0.22 | 11.10 |
Hca217B | AniPRP8 | 42.75 | 37.25 | 47.00 | 166.00 | 0.91 | 0.22 | NA | 0.27 | NA |
Hca217B | Afu0163 | 37.62 | 35.38 | 49.17 | 163.83 | 0.77 | 0.22 | NA | 0.25 | NA |
Hca217B | Afu5109 | 37.62 | 36.38 | 48.83 | 164.17 | 0.77 | 0.22 | NA | 0.26 | NA |
Hca217B | Nfi0181 | 35.88 | 33.12 | 48.83 | 164.17 | 0.73 | 0.20 | 2.92 | 0.24 | 12.41 |
Hca217B | ClaPRP8 | 39.00 | 60.00 | 49.17 | 160.83 | 0.79 | 0.37 | NA | 0.52 | NA |
BciPRP8 | PbrPRP8 | 43.50 | 27.50 | 49.17 | 163.83 | 0.88 | 0.17 | NA | 0.19 | NA |
BciPRP8 | AniPRP8 | 39.00 | 24.00 | 47.00 | 166.00 | 0.83 | 0.14 | NA | 0.16 | NA |
BciPRP8 | Afu0163 | 39.50 | 16.50 | 49.17 | 163.83 | 0.80 | 0.10 | NA | 0.11 | NA |
BciPRP8 | Afu5109 | 39.50 | 17.50 | 48.83 | 164.17 | 0.81 | 0.11 | NA | 0.11 | NA |
BciPRP8 | Nfi0181 | 35.50 | 16.50 | 48.83 | 164.17 | 0.73 | 0.10 | 2.61 | 0.11 | 24.21 |
BciPRP8 | ClaPRP8 | 36.75 | 46.25 | 49.50 | 160.50 | 0.74 | 0.29 | 3.45 | 0.36 | 9.48 |
PbrPRP8 | AniPRP8 | 38.88 | 31.12 | 48.50 | 164.50 | 0.80 | 0.19 | NA | 0.22 | NA |
PbrPRP8 | Afu0163 | 38.25 | 23.75 | 50.67 | 162.33 | 0.75 | 0.15 | NA | 0.16 | NA |
PbrPRP8 | Afu5109 | 38.25 | 24.75 | 50.33 | 162.67 | 0.76 | 0.15 | NA | 0.17 | NA |
PbrPRP8 | Nfi0181 | 40.25 | 22.75 | 50.33 | 162.67 | 0.80 | 0.14 | NA | 0.15 | NA |
PbrPRP8 | ClaPRP8 | 38.88 | 48.12 | 51.00 | 159.00 | 0.76 | 0.30 | NA | 0.39 | NA |
AniPRP8 | Afu0163 | 36.62 | 22.38 | 48.50 | 164.50 | 0.76 | 0.14 | NA | 0.15 | NA |
AniPRP8 | Afu5109 | 35.62 | 22.38 | 48.17 | 164.83 | 0.74 | 0.14 | 3.21 | 0.15 | 21.44 |
AniPRP8 | Nfi0181 | 38.62 | 20.38 | 48.17 | 164.83 | 0.80 | 0.12 | NA | 0.14 | NA |
AniPRP8 | ClaPRP8 | 44.50 | 43.50 | 48.83 | 161.17 | 0.91 | 0.27 | NA | 0.33 | NA |
Afu0163 | Afu5109 | 1.00 | 0.00 | 50.33 | 162.67 | 0.02 | 0.00 | 0.02 | 0.00 | NA |
Afu0163 | Nfi0181 | 11.00 | 2.00 | 50.33 | 162.67 | 0.22 | 0.01 | 0.26 | 0.01 | 20.84 |
Afu0163 | ClaPRP8 | 40.50 | 47.50 | 51.00 | 159.00 | 0.79 | 0.30 | NA | 0.38 | NA |
Afu5109 | Nfi0181 | 12.00 | 2.00 | 50.00 | 163.00 | 0.24 | 0.01 | 0.29 | 0.01 | 23.38 |
Afu5109 | ClaPRP8 | 41.50 | 47.50 | 50.67 | 159.33 | 0.82 | 0.30 | NA | 0.38 | NA |
Nfi0181 | ClaPRP8 | 39.62 | 47.38 | 50.67 | 159.33 | 0.78 | 0.30 | NA | 0.38 | NA |