Genome-wide comparative analysis of the IQD gene families in Arabidopsis thaliana and Oryza sativa

Table 5 Major motifs in Arabidopsis and rice IQD proteins

Motif^a	Multilevel consensus sequence^b
1	EEWAAIKIQTAFRGYLARRALRALKGLVRLQALVRGHLVRKQAAMTLRCMQALVRVQAQVRR
2	MGKKGKWFKSLFGGF
3	SWFTAVKRIFISPTK
4	NKKWKLWRTSSED
5	EKRRWSFRKSS
6	PPCPPPPPPHH
7	KHAIAVAIATAAAAEAAVAAA
8	QAAAEVVRLTS
9	SEENQALQKQLHQKHHHE
10	GEDWDDSILSK
11	EEIEAKLQMRQEAAIKRERAMAYAFSHQW
12	WKNSSKTGNPTFMDP
13	DNPNWGWNWLERWMA
14	ARPWENRLMDD
15	YEENPKIVEMDTGKPYY
16	GSMNDDESFTSCPDF
17	PNYMANTESAKAKVRCQSAPR
18	SAKKRLSFPN
19	DHVKEIEEGWCDSIG
20	WMEKLTNNAFADKLLASSPTTLPLH

^a Numbers (1–20) correspond to the motifs schematically presented in the reference bars of Figure 3. Motif 1 corresponds to the IQ67 consensus sequence. The remaining motifs are listed in the order as they occur in the primary structures of IQD proteins, continuing with motifs most N-terminal.
^b Sequences were obtained from the MEME analysis of the 61 Arabidopsis and rice IQD full length proteins. Only consensus sequences that are shared by at least four Arabidopsis IQD proteins are listed.

ISSN: 2730-7182