From: EM for phylogenetic topology reconstruction on nonhomogeneous data
Mean Robinson-Foulds distane with QuartetSuite, 600 bp | |||||
---|---|---|---|---|---|
Top. | Method | b | |||
0.005 | 0.015 | 0.05 | 0.1 | ||
cc | NJ | 7.63 (10.82) | 6.55 (18.32) | 10.70 (13.04) | 12.82 (9.57) |
ML | 3.70 (4.91) | 2.16 (1.46) | 3.04 (1.42) | 7.37 (19.97) | |
EMtree | 3.77 (4.14) | 2.22 (2.33) | 3.20 (1.10) | 3.62 (3.27) | |
global NJ | 1.68 (3.42) | 1.60 (0.64) | 6.96 (10.76) | 13.16 (1.45) | |
global ML | 1.04 (3.08) | 0.0 (0.0) | 0.0 (0.0) | 3.10 (0.99) | |
cd | NJ | 8.01 (14.01) | 8.96 (11.61) | 11.16 (12.54) | 12.31 (10.48) |
ML | 5.16 (3.56) | 3.34 (2.03) | 3.39 (1.59) | 8.12 (19.28) | |
EMtree | 5.31 (3.96) | 3.71 (2.82) | 3.67 (1.61) | 4.38 (4.12) | |
global NJ | 5.80 (3.72) | 5.56 (0.69) | 8.44 (0.69) | 13.12 (1.31) | |
global ML | 5.04 (3.08) | 4.0 (0.0) | 4.0 (0.0) | 6.60 (0.84) | |
dd | NJ | 10.55 (9.53) | 9.45 (9.39) | 10.90 (13.95) | 11.97 (10.91) |
ML | 7.71 (3.67) | 6.42 (1.12) | 6.08 (1.58) | 9.58 (17.09) | |
EMtree | 7.58 (5.07) | 6.87 (1.73) | 5.94 (1.44) | 6.60 (4.60) | |
global NJ | 9.24 (0.94) | 9.60 (0.64) | 10.4 (2.88) | 13.08 (1.31) | |
global ML | 7.48 (0.77) | 8.0 (0.0) | 8.0 (0.0) | 10.60 (0.84) |