Skip to main content

Table 2 TMRCA calculated for the L0d/k subgroups and comparative whole genome estimates

From: MtDNA control region variation affirms diversity and deep sub-structure in populations from southern Africa

Divergeance times

Haplogroup

ρ

σ

Years 1

SD 2

Years 3

CI

L0d

10.8580

2.2635

96601

20138

152,384

12,698

L0d1a

7.1351

2.0865

63480

18563

34,921

6,349

L0d1b

4.6709

1.5502

41556

13792

34,921

6,349

L0d1c

6.7119

2.2906

59714

20379

53,175

7,936

L0d2a

3.8242

1.7380

34023

15463

64,287

8,730

L0d2b

8.5000

2.4777

75623

22044

64,287

8,730

L0d2c

3.2941

1.5519

29307

13807

64,287

8,730

L0d2d

5.0000

1.8559

44484

16512

-

-

L0d3

8.0000

2.6273

71174

23375

100,795

10,317

L0dx

4.0000

1.5411

35587

13711

-

-

L0k1 4

8.5161

2.8144

75766

25039

142,860

11,905

Coalescent times (TMRCA)

Haplogroup

ρ

σ

Years 1

SD 2

Years 3

CI

L0d

9.8580

2.0307

87705

18067

100,795

10,317

L0d1

6.4286

1.2576

57194

11189

53,175

7,936

L0d2

4.8718

1.6199

43343

14412

64,287

8,730

L0d1a

4.1351

1.1634

36789

10351

18,254

6,349

L0d1b

3.6709

1.1845

32659

10538

16,667

6,349

L0d1c

4.7119

1.8019

41921

16031

23,810

5,555

L0d2a

1.8242

1.0143

16230

9024

8,730

3,174

L0d2b

6.5000

2.0344

57829

18100

-

-

L0d2c

2.2941

1.1867

20410

10558

20,635

5,555

L0d2d

4.0000

1.5635

35587

13910

-

-

L0d3

4.0000

1.7037

35587

15157

31,746

7,936

L0dx

3.0000

1.1726

26690

10432

-

-

L0k1 4

1.5161

0.9596

13488

8538

39,683

8,730

  1. 1 Years are calculated using ρ [20] and multiplying with the mutation rate from Ward et al., [18].
  2. 2 Standard deviation (SD) are calculated from σ by multiplying with the specific mutation rate from Ward et al., [18].
  3. 3 Estimates based on whole mitochondrial genomes obtained from Behar et al., [12].
  4. 4 L0k estimates from present study only include L0k1, while the Behar et al., study include L0k1 and L0k2 haplotypes.