Models | ln La | Estimate of parameters | 2ΔLb(P-value) | Positively selected sites |
---|---|---|---|---|
M0:one-ratio | −4450.77242 | ω = 0.16615 |  |  |
Branch-specific models | Â | Â | Â | Â |
Branch a (ancestral Cetacea) | Â | Â | Â | Â |
Two-ratio | −4450.74677 | ω0 = 0.16656, ω1 = 0.14336 | 0.0513 |  |
(P = 0.8208) | ||||
Branch b (ancestral Odontoceti) | Â | Â | Â | Â |
Two-ratio | −4447.80276 | ω0 = 0.16253, ω1 = 1.04812 | 5.93932 |  |
( P = 0.0148) | ||||
Branch c (ancestral Mysticeti) | Â | Â | Â | Â |
Two-ratio | −4449.912614 | ω0 = 0.16491, ω1= 0.93251 | 1.719612 |  |
(P = 0.189743) | ||||
Branch d (ancestral Cetartiodactyla) | Â | Â | Â | Â |
Two-ratio | −4449.692636 | ω0 = 0.16802, ω1 = 0.0001 | 2.159568 |  |
(P = 0.1416845) | ||||
Branch e (ancestral Carnivora) | Â | Â | Â | Â |
Two-ratio | −4450.028289 | ω0 = 0.16284, ω1 = 0.28977 | 1.488262 |  |
(P = 0.2224863) | ||||
Branch f (ancestral Chiroptera) | Â | Â | Â | Â |
Two-ratio | −4450.762558 | ω0 = 0.16637, ω1 = 0.14605 | 0.019724 |  |
(P = 0.8883106) | ||||
Branch g (ancestral Rodentia) | Â | Â | Â | Â |
Two-ratio | −4450.367662 | ω0 = 0.16377, ω1 = 0.33139 | 0.809516 |  |
(P = 0.3682634) | ||||
Branch h (ancestral Primates) | Â | Â | Â | Â |
Two-ratio | −4450.765224 | ω0 = 0.16585, ω1 = 0.17607 | 0.014396 |  |
(P = 0.9044964) | ||||
Branch-site models | Â | Â | Â | Â |
Null | −4370.04122 | p0 = 0.80258, p1 = 0.19742, ω0 = 0.05816, ω1 = 1 |  |  |
Branch a (ancestral Cetacea) | Â | Â | Â | Â |
Alternative | −4370.04122 | p0 = 0.80258, p1 = 0.19742, p2a = 0, p2b = 0, ω0 = 0.05816, ω1 = 1, ω2 = 1 | 0 (P = 1) | None |
Branch b (ancestral Odontoceti) | Â | Â | Â | Â |
Alternative | −4365.28771 | p0 = 0.46391, p1 = 0.12028, p2a = 0.33019, p2b = 0.08561, ω0 = 0.05123, ω1 = 1, ω2 = 2.03039 | 9.50702 | K24E(0.945);P34Q(0.914);S68P(0.535);S74N(0.947);S84T(0.94) |
( P = 0.0086) | ||||
Branch c (ancestral Mysticeti) | Â | Â | Â | Â |
Alternative | −4368.231030 | p0 = 0, p1 = 0, p2a = 0.80784, p2b = 0.19216, ω0 = 0.05877, ω1 = 1, ω2 = 1 | 3.62038 | M119T(0.777);V235A(0.937) |
(P = 0.163623) | ||||
Branch d (ancestral Cetartiodactyla) | Â | Â | Â | Â |
Alternative | −4370.041222 | p0 = 0.80258, p1 = 0.19742, p2a = 0, p2b = 0, | 0 (P = 1) | None |
ω0 = 0.05816, ω1 = 1, ω2 = 1 | ||||
Branch e (ancestral Carnivora) | Â | Â | Â | Â |
Alternative | −4370.041222 | p0 = 0.80258, p1 = 0.19742, p2a = 0, p2b = 0, | 0 (P = 1) | 186T(0.571) |
ω0 = 0.05816, ω1 = 1, ω2 = 1 | ||||
Branch f (ancestral Chiroptera) | Â | Â | Â | Â |
Alternative | −4369.925398 | p0 = 0.75669, p1 = 0.18750, p2a = 0.04473, p2b = 0.01108, ω0 = 0.05728, ω1 =1, ω2 =1 | 0.231644 | 84T(0.736) |
(P = 0.8906337) | ||||
Branch g (ancestral Rodentia) | Â | Â | Â | Â |
Alternative | −4370.041222 | p0 = 0.80258, p1 = 0.19742, p2a =0, p2b =0, | 0 (P = 1) | 43G(0.621) |
ω0 = 0.05816, ω1 = 1, ω2 = 1 | ||||
Branch h (ancestral Primates) | Â | Â | Â | Â |
Alternative | −4370.041222 | p0 = 0.80258, p1 = 0.19742, p2a = 0, p2b = 0, | 0 (P = 1) | None |
 |  | ω0 = 0.05817, ω1 = 1, ω2 = 1 |  |  |