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Table 2 Primers used for PCR diagnostic

From: Endosymbiont diversity among sibling weevil species competing for the same resource

Target Species

Target gene

Primer name

Primer sequence (5’-3’)

Product size (kb)

Temp.*(°C)

Refs.

Host

CytB rRNA

CBJ-10933

TATGTACTACCATGAGGACAAATATC

0.5

45

[42]

(Curculio sp.)

 

CBN-11367

ATTACACCTCCTAATTTATTAGGAAT

  

[42]

Eubacterial Universal Primers

16S rRNA

008For

AGA GTT TGA TCA TGG CTC AG

1.5

53

[43]

  

1487Rev

TAC CTT GTT ACG ACT TCA CC

  

(**)

Candidatus Curculioniphilus buchneri

16S rRNA

16S-F

AGAGATCTGGAGGAATATCA

0.4

52

(*)

  

16S-R

CACTAAAGCATCTCTGCTAAAT

  

(*)

 

GroEL

GroEL 2 F

ATG GGB GCT CAA ATG GTK AAA

0.9

55

[38]

  

GroEL 2R

CTCTTTCATTTCAACTTCNGTBGCA

  

[38]

Wolbachia

16S rRNA

W-Spec F

CATACCTATTCGAAGGGATAG

0.4

60

[44]

  

W-Spec R

AGCTTCGAGTGAAACCAATTC

  

[44]

Rickettsia

16S rRNA

RbF

GCTCAGAACGAACGCTATC

0.9

58

[12]

  

RbR

GAAGGAAAGCATCTCTGC

  

[12]

Spiroplasma

ITS and 16S rRNA

Spixo-16S F

TTAGGGGCTCAACCCCTAACC

0.8

52

[45]

  

Spixo-16S R

TCTGGCATTGCCAACTCTC

  

[45]

Sodalis

16S rRNA

Sodalis 370 F

CGRTRGCGTTAAYAGCGC

0.2

55

[38]

  

16SSod590R

AACAGACCGCCTGCGTACG

  

[38]

  1. *Annealing temperature. References: (*) this study; (**) nucleotides numbering from Escherichia coli, GenBank accession number J01859.