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Table 6 DNA polymorphism statistics and neutrality tests

From: Amblyomma cajennense (Fabricius, 1787) (Acari: Ixodidae), the Cayenne tick: phylogeography and evidence for allopatric speciation

 

Clade

NW

CO

NE

EA

AR

PE

Total

12SrDNA

Sample size/H

51/9

7/2

16/2

15/6

10/3

24/4

123/24

 

Hd ± SD

0.58 ± 0.07

0.48 ± 0.17

0.23 ± 0.13

0.85 ± 0.06

0.64 ± 0.10

0.49 ± 0.11

0.83 ± 0.03

 

π(%) ± SD

0.24 ± 0.04

0.14 ± 0.05

0.14 ± 0.07

1.2 ± 0.15

0.22 ± 0.05

0.16 ± 0.06

7.6 ± 0.3

DL

Sample size/H

46/2

6/1

14/5

15/10

10/4

19/3

110/25

 

Hd ± SD

0.08 ± 0.05

0

0.50 ± 0.16

0.91 ± 0.06

0.73 ± 0.10

0.20 ± 0.12

0.81 ± 0.03

 

π(%) ± SD

0.02 ± 0.00

0

0.59 ± 0.17

0.95 ± 0.13

0.47 ± 0.46

0.05 ± 0.03

7.0.4 ± 0.33

COII

Sample size/H

24//4

3/1

12/6

11/7

5/5

5/3

60/25

 

Hd ± SD

0.57 ± 0.09

0

0.75 ± 0.12

0.91 ± 0.07

1 ± 0.13

0.70 ± 0.22

0.92 ± 0.02

 

π(%) ± SD

0.39 ± 0.09

0

0.33 ± 0.10

0.60 ± 0.62

0.36 ± 0.07

1.44 ± 0.80

9.95 ± 0.63

ITS2

Sample size/H

20/5

7/1

15/1

18/5

5/3

9/4

74/19

 

Hd ± SD

0.44 ± 0.13

0

0

0.77 ± 0.05

0.70 ± 0.22

0.75 ± 0.11

0.90 ± 0.02

 

π(%) ± SD

0.09 ± 0.03

0

0

0.24 ± 0.05

0.10 ± 0.04

0.12 ± 0.03

3.60 ± 0.27

 

Fu’s F

-1.912

-

-

0.39

-0.829

-1.039

14.341

 

R2

0.1074

-

-

0.1439

0.2449

0.1667

0.1461

mtDNA total

Sample size/H

17/6

2/2

9/4

8/8

5/5

3/3

44/27***

 

Hd ± SD

0.82 ± 0.06

1.00 ± 0.25

0.69 ± 0.15

1.00 ± 0.06

1.00 ± 0.13

1.00 ± 0.27

0.94 ± 0.02***

 

π(%) ± SD

0.22 ± 0.05

0.08 ± 0.04

0.32 ± 0.13

0.84 ± 0.15

0.36 ± 0.09

0.21 ± 0.06

8.4 ± 0.61

 

Fu’s F

0.347

-

2.112

-2.011

-1.481

-

10.292

 

R2

0.1324

-

0.1797

0.1583

0.2111

-

0.1626

  1. Sample size and diversity measures for each gene and for each clade. Hd = haplotype diversity, Gd = gene diversity, H = number of haplotypes or genotypes, π = nucleotide diversity in %, SD = standard deviation. Results of Rozas-Onsins’s (R2) and Fu’s F neutrality tests were recorded for the combined mitochondrial and the nuclear datasets. NW = Ecuador, Costa Rica, Mexico, Texas; CO = Colombia; NE = French Guiana + Venzuela + Brazil (Rondonia); EA = Brazil (Atlantic Coast, Mato Grosso) + Argentina (Yungas); AR = Agentina + Paraguay (Chaco); PE = Perú. *** = p < 0.001. 12SrDNA = small mitochondrial ribosmal subunit, COII = cytochrome oxidase c subunit II, DL = control region or d-loop, ITS2 = intergenic spacer 2, mtDNA = concatenated mitochondrial genes.