From: Evolutionary history of bovine endogenous retroviruses in the Bovidae family
Cluster of ERVs | Family divergence | Phylogeny based subs. rate | Fixed subs. rate | ||||
---|---|---|---|---|---|---|---|
Ā | Ā | LTR div / (dist 3ā²ā+ādist 5ā²) | LTR div Ć 2.3x10-6- LTR div Ć 5x10-6 | ||||
Ā | Ā | Btau | Bind | Bgru | Btau | Bind | Bgru |
1 | 126-0 | 19.36 | 20.47 | 14.73 | 30.25-13.92 | 31.98-14.71 | 23.01-10.58 |
2 | 126-0 | 26.05 | 26.89 | 27.78 | 24.07-11.07 | 24.84-11.43 | 25.67-11.81 |
3 | 19-1 | 4.66 | 7.28 | 8.50 | 19.02-8.75 | 29.71-13.66 | 34.70-15.96 |
4 | 38-18 | 25.60 | 40.34 | 27.31 | 20.64-9.49 | 32.52-14.96 | 22.01-10.13 |
5 | 64-19 | 98.94 | 98.94 | 89.36 | 35.85-16.49 | 35.85-16.49 | 32-38-14.89 |
6 | Ā | NA | NA | NA | NA | NA | NA |
7 | 64-19 | 25.99 | 25.99 | 25.29 | 34.48-15.86 | 34.48-15.86 | 33.56-15.44 |
8 | - | 60.99 | 56.30 | 88.23 | 21.81-10.04 | 20.14-9.27 | 31.57-14.52 |
9 | 35-16 | 36.64 | 36.64 | 36.81 | 32.36-14.88 | 32.36-14.88 | 32.51-14.95 |
10 | - | 45.55 | 51.95 | 45.71 | 34.04-15.66 | 38.82-17.86 | 34.16-15.71 |
11 | 64-4 | 10.16 | 11.66 | 6.61 | 21.90-10.07 | 25.15-11.57 | 14.24-6.55 |
12 | Ā | NA | NA | NA | NA | NA | NA |
13 | Ā | NA | NA | NA | NA | NA | NA |
14 | 44-5 | 12.87 | 12.87 | 12.41 | 15.57-7.16 | 15.57-7.16 | 15.01-6.91 |
15 | 50-14 | 5.34 | 5.70 | 5.56 | 30.02-13.81 | 13.81-32.01 | 31.26-14.38 |
16 | 50-14 | 60.70 | 60.70 | 56.03 | 21.99-10.12 | 10.12-21.99 | 20.30-9.34 |
17 | 50-14 | 7.60 | 9.03 | 6.90 | 24.93-11.47 | 11.47-29.61 | 22.62-10.40 |
18 | Ā | NA | NA | NA | NA | NA | NA |
19 | 27-0 | 12.32 | 12.32 | 12.54 | 18.25-8.40 | 18.25-8.40 | 18.57-8.54 |
20 | 27-0 | 13.18 | 14.43 | 16.54 | 22.31-10.27 | 24.45-11.25 | 28.01-12.89 |