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Table 1 Haplotypic frequencies, allelic richness, and heterozygosities of MHC class I loci in 6 wild panda populations

From: Patterns of genetic differentiation at MHC class I genes and microsatellites identify conservation units in the giant panda

  

Population

Locus

Haplotype

QLI (17)

MSH (19)

QLA (21)

DXL (19)

XXL (22)

LSH (22)

Aime-C

01

/

0.026

0.016

0.100

/

0.043

 

02

0.368

0.250

0.250

0.067

0.107

0.357

 

03

0.079

0.355

0.375

0.200

0.196

0.143

 

04

/

/

0.031

/

0.018

/

 

05

0.395

0.066

0.094

0.100

0.107

0.071

 

06

0.079

0.105

0.109

0.467

0.107

0.157

 

07

0.026

0.118

0.063

0.067

0.375

0.114

 

08

0.053

0.079

0.063

/

0.089

0.071

 

09

/

/

/

/

/

0.043

 

AR

5.736

6.498

7.018

6.000

6.497

7.519

 

H O

0.684

0.737

0.781

0.933

0.821

0.800

 

H E

0.711

0.785

0.804

0.738

0.792

0.812

Aime-F

01

1.000

1.000

1.000

1.000

1.000

1.000

 

AR

/

/

/

/

/

/

 

H O

/

/

/

/

/

/

 

H E

/

/

/

/

/

/

Aime-I

01

0.125

0.134

0.212

0.250

0.290

0.256

 

02

0.438

0.500

0.455

0.219

0.210

0.207

 

03

/

0.073

0.091

0.125

0.129

0.098

 

04

0.188

0.232

0.167

0.375

0.113

0.256

 

05

/

0.061

0.030

0.031

0.145

0.073

 

06

0.146

/

/

/

0.097

0.073

 

07

0.104

/

0.045

/

0.016

0.037

 

AR

4.993

4.842

5.528

4.938

6.458

6.613

 

H O

0.626

0.732

0.758

0.625

0.774*

0.829

 

H E

0.741

0.734

0.777

0.756

0.832

0.814

Aime-L

01

0.021

0.012

0.121

0.094

0.032

0.049

 

02

0.167

0.226

0.303

0.219

0.226

0.232

 

03

0.292

0.262

0.273

0.188

0.210

0.244

 

04

0.146

0.286

0.106

0.156

0.113

0.244

 

05

/

0.024

0.030

0.031

0.065

/

 

06

0.375

0.190

0.167

0.250

0.129

0.171

 

07

/

/

/

0.063

0.226

0.061

 

AR

4.624

4.946

5.69

6.935

6.663

5.749

 

H O

0.792*

0.810

0.788

0.938

0.774

0.731

 

H E

0.740

0.789

0.803

0.843

0.824

0.802

Total

AR

5.118

5.429

6.079

5.958

6.539

6.627

 

H O

0.701

0.760

0.776

0.832

0.790

0.787

 

H E

0.731

0.769

0.795

0.779

0.816

0.809

  1. Notes: The predominant haplotype of each population is marked in bold. The figures in parentheses are the number of haplotypes in each population. Asterisks denote significant deviations from HWE (P < 0.05).