Table 3 Locus specific and average nucleotide diversity (π) and Tajima’s D estimates for each population separately and summarized over all populations within species (Tot)
From: Inferring the demographic history of European Ficedula flycatcher populations
Nucleotide diversity (π, ‰) | Tajima’s D | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Pied flycatcher | Collared flycatcher | Pied flycatcher | Collared flycatcher | |||||||||||||||||
Locus | Sp | Ge | Sc | Ba | Tot | It | Hu | Cz | Ba | Tot | Sp | Ge | Sc | Ba | Tot | It | Hu | Cz | Ba | Tot |
PSMC2 | 0.0 | 2.3 | 2.1 | 2.6 | 2.3 | 2.1 | 2.9 | 3.5 | 2.1 | 2.7 | 0.12 | 0.03 | 0.58 | 0.02 | −0.49 | −0.47 | −0.29 | −0.72 | −1.05 | |
ARP6 | 3.4 | 4.1 | 3.0 | 5.7 | 5.3 | 6.4 | 8.9 | 6.4 | 5.3 | 7.5 | −0.21 | 0.27 | −0.82 | 1.18 | −0.01 | 0.58 | 0.55 | 0.52 | 1.26 | 0.91 |
RABL4 | 10.2 | 8.6 | 8.5 | 9.2 | 9.1 | 4.7 | 9.1 | 6.4 | 6.7 | 9.5 | 1.54 | 0.85 | 0.60 | 1.43 | 0.40 | −0.09 | 0.39 | −0.10 | 0.15 | −0.12 |
ETNK1 | 4.7 | 2.4 | 2.1 | 2.1 | 2.6 | 2.9 | 4.1 | 4.7 | 2.8 | 3.8 | −0.39 | 0.72 | 0.27 | 0.17 | −0.59 | −1.05 | −0.16 | 0.41 | −0.38 | −0.92 |
ABHD10 | 5.8 | 4.1 | 5.2 | 5.6 | 5.8 | 6.0 | 5.5 | 4.9 | 4.5 | 5.3 | 0.11 | 0.17 | 0.37 | −0.13 | 0.27 | 0.47 | 0.81 | −0.37 | −0.31 | −0.14 |
MOSPD2 | 4.1 | 3.6 | 4.4 | 5.0 | 6.4 | 5.9 | 5.6 | 5.2 | 7.2 | 0.00 | 0.33 | 0.64 | 0.44 | 1.39 | 0.56 | 1.10 | −0.31 | 0.60 | ||
KIAA1706 | 0.0 | 3.5 | 3.5 | 3.0 | 3.7 | 5.1 | 4.7 | 0.0 | 4.8 | 5.4 | 0.59 | 0.49 | 0.24 | 1.06 | 0.85 | 0.98 | −0.34 | −0.28 | ||
20904 | 4.6 | 5.9 | 5.3 | 5.2 | 5.7 | 5.1 | 4.5 | 5.5 | 6.1 | 5.5 | 0.74 | 0.78 | 0.38 | 2.53 | 0.57 | 0.31 | −0.32 | −1.03 | −0.42 | −0.75 |
UNKNOWN | 4.4 | 3.9 | 5.1 | 4.8 | 2.9 | 3.8 | 0.0 | 3.7 | 4.1 | 0.17 | 0.83 | 1.31 | 0.83 | 1.62 | 0.39 | 0.11 | −0.01 | |||
CRIPT | 4.4 | 3.9 | 6.6 | 4.9 | 4.4 | 6.4 | 5.0 | 5.4 | 5.5 | 5.9 | −0.80 | 1.00 | 0.64 | 0.50 | 0.31 | 0.22 | −0.21 | 0.37 | −0.07 | −0.46 |
PSMB1 | 1.5 | 5.7 | 6.9 | 5.1 | 3.1 | 2.4 | 4.7 | 3.0 | 2.3 | 2.6 | −0.99 | −0.01 | 1.49 | 0.35 | 0.78 | −0.16 | 0.27 | 0.68 | −0.67 | −0.43 |
PPIL4 | 5.7 | 6.1 | 2.9 | 3.9 | 5.3 | 3.4 | 2.5 | 3.4 | 2.9 | 4.8 | 1.84 | 0.17 | 0.19 | −0.28 | 0.48 | −0.66 | −1.44 | −0.83 | −0.87 | −0.24 |
DST | 0.0 | 1.1 | 1.0 | 2.5 | 2.5 | 4.1 | 4.4 | 3.7 | 0.04 | −0.29 | −0.74 | 1.89 | 0.12 | 0.52 | −0.20 | |||||
CBPZ | 0.8 | 5.1 | 4.3 | 3.5 | 3.5 | 4.4 | 5.9 | 6.8 | 4.8 | 6.6 | −0.61 | 0.43 | 0.38 | −0.88 | −0.09 | 0.38 | −0.39 | 0.39 | −0.44 | 0.17 |
08235 | 5.5 | 2.9 | 4.5 | 5.6 | 4.8 | 6.9 | 7.0 | 5.3 | 5.2 | 5.6 | −0.42 | −0.30 | 0.55 | −1.13 | −1.04 | −0.19 | −0.80 | −0.69 | −0.18 | −0.69 |
PSMD14 | 7.2 | 7.1 | 8.6 | 8.0 | 9.4 | 4.5 | 4.5 | 5.1 | −1.38 | 0.64 | 0.19 | 0.46 | −0.50 | −0.99 | −0.75 | −0.83 | ||||
ADAL | 1.3 | 5.8 | 4.4 | 5.2 | 7.5 | 5.4 | 5 | 5.6 | −0.61 | 1.07 | 1.02 | 1.15 | 0.01 | 0.66 | 0.83 | 0.42 | ||||
POLR2C | 0.0 | 2.3 | 2.7 | 2.3 | 0.8 | 0.0 | 1.2 | 0.8 | −1.03 | −0.66 | −0.51 | −1.05 | −0.96 | −1.42 | ||||||
UNKNOWN | 1.8 | 2.6 | 2.2 | 1.4 | 2.2 | 5.8 | 4.5 | 4.7 | 5 | 5.5 | 0.87 | −0.37 | −0.75 | −0.66 | −0.51 | −0.01 | −0.77 | −0.52 | −0.28 | −0.83 |
PSMD6 | 2.1 | 2.2 | 2.3 | 2.1 | 2.4 | 2.5 | 3.0 | 2.1 | 3.6 | 3.1 | 0.49 | 1.10 | 1.11 | 0.75 | 0.32 | −0.92 | −0.22 | −1.02 | −0.39 | −0.89 |
HARS | 0.0 | 0.3 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | 0.0 | 1.3 | 0.6 | −1.16 | −1.07 | −1.13 | −1.30 | ||||||
WDR24 | 7.7 | 6.1 | 5.5 | 4.2 | 6.1 | 7.6 | 5.7 | 4.1 | 5.6 | 6.5 | 0.14 | 0.13 | −0.43 | 0.23 | −0.28 | −0.26 | −0.57 | −0.44 | −0.34 | −0.42 |
02419 | 1.5 | 0.9 | 1.5 | 1.4 | 2.4 | 1.7 | 1.6 | 1.7 | 1.63 | 1.03 | −0.81 | −0.18 | 0.20 | −0.34 | −1.15 | −0.38 | ||||
HEPACAM | 9.0 | 3.2 | 10.9 | 4.8 | 9.2 | 13.6 | 13 | 13.2 | 11.8 | 13.5 | −0.01 | −0.75 | 0.91 | 1.21 | 0.53 | 2.76 | 1.29 | 1.58 | 1.63 | 1.53 |
Average | 3.6 | 3.9 | 4.4 | 4.1 | 4.3 | 4.9 | 4.8 | 4.7 | 4.4 | 5.1 | 0.11 | 0.22 | 0.38 | 0.35 | 0.12 | 0.12 | 0.00 | −0.01 | −0.22 | −0.32 |