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Table 1 List of plant species and PDCD4 sequences used with the number of MA3 domains present in each protein

From: The unique evolution of the programmed cell death 4 protein in plants

Organism

Protein accession

Nucleotide accession

Number of MA3 domains

Arabidopsis thaliana

NP_567708

At4g24800 (MAT5)

4

 

NP_568968

At5g63190 (MAT6)

4

 

NP_190411

At3g48390 (MAT7)

4

 

NP_173687

At1g22730 (MAT8)

4

Capsella rubella

EOA15859

 

4

 

EOA14564

 

4

 

EOA23591

 

4

 

EOA39121

 

4

Thellungiella halophila

Thhalv10024556ma

 

4

 

Thhalv10003735ma

 

4

 

Thhalv10006903ma

 

4

Brassica rapa

Bra013836a

 

4

 

Bra038615a

 

4

 

Bra024534a

 

4

Gossypium raimondii

Gorai.001G062000.1a

 

4

 

Gorai.003G108800.1a

 

4

 

Gorai.005G076400.1a

 

4

Theobroma cacao

Thecc1EG014544t1a

 

4

 

Thecc1EG039086t1a

 

4

Populus trichocarpa

XP_002318100

XM_002318064

4

 

XP_002307530

XM_002307494

4

Ricinus communis

XP_002511272

XM_002511226

4

 

XP_002527108

XM_002527062

4

Medicago truncatula

XP_003608913

XM_003608865

4

 

XP_003619027

XM_003618979

4

Glycine max

XP_003525619

XM_003525571

4

 

XP_003548962

XM_003548914

4

Vitis vinifera

XP_002277813

XM_002277777

4

 

XP_002264439

XM_002264403

4

Solanum lycopersicum

XP_004237843

LOC101258853

4

 

XP_004236308

LOC101255979

4

 

XP_004236309

LOC101256273

4

Eschscholzia californica

TUHA-2426b

 

4

 

EVOD-8494b

 

4

Aristolochia elegans

PAWA5255b

 

4

 

PAWA2930b

 

4

Hordeum vulgare

BAJ94459

AK363255

4

 

BAK08048

AK376854

4

Sorghum bicolor

XP_002444968

Sb07g002090

4

 

XP_002448072

Sb06g020520

4

 

XP_002465627

Sb01g042530

4

Brachypodium distachyon

XP_003573315

XM_003573267

4

 

XP_003579994

XM_003579946

4

 

XP_003561877

XM_003561829

4

Zea mays

NP_001147914

NM_001154442

4

 

NP_001159302

NM_001165830

4

Oryza sativa

NP_001060879

Os08g0120500

4

 

NP_001053119

Os04g0482800

4

 

AAN05329

Os03g0222100

4

Illicium floridanum

VZCI-11530b

 

4

Amborella trichopoda

URDJ-37850b

 

4

Austrobaileya scandens

FZJL-1758b

 

4

 

FZJL-1759b

 

4

Picea abies

MA_2314g0010c

 

4

 

MA_10693g0010c

 

4

Cycas micholitz

XZUY-1711b

 

4

Sundacarpus amarus

KLGF-13902b

 

4

Selaginella moellendorffii

XP_002967718

XM_002964270

4

 

XP_002979104

XM_002979058

4

Physcomitrella patens

XP_001777050

XM_001776998

4

 

XP_001754785

XM_001754733

4

Chaetosphaeridium globosum

HO379087

 

4d

Volvox carteri

XP_002956063

XM_002956017

4

Chlamydomonas reinhardtii

XP_001696827

XM_001696775

4

Chlorella variabilis

EFN55681

GL433844

4a

Ostreococcus tauri

XP_003079341

XM_003079293

2

Ostreococcus lucimarimus

XP_001417999

XM_001417962

2

Micromonas pusilla

XP_003056900

XM_003056854

2

Micromonas sp. RCC299

XP_002502542

XM_002502496

2

Phaeodactylum tricornutum

XP_002184928

XM_002184892

2

Ectocarpus siliculosus

CBJ33138

FN648632

2

Thalassiosira pseudonan

XP_002295291

XM_002295255

2

Aureococcus anophagefferens

EGB07675

GL833130

2

Phytophthora sojae

EGZ06926

JH159163

2

Phytophthora infestans

XP_002899252

XM_002899206

2

Albugo laibachii

CCA24083

FR824266

2

  1. aObtained from Phytozome v9.1 [38].
  2. bObtained from http://www.onekp.com.
  3. cObtained from the Spruce Genome Project [39].
  4. dPartial sequence available suggests the likely presence of four MA3 domains.