Skip to main content

Table 2 Nodal support values for single genes and combined gene data sets

From: Transitions between Andean and Amazonian centers of endemism in the radiation of some arboreal rodents

 

Combined data sets

Single gene data sets

 

5-gene

2-gene

3-gene

    

Node

Bayesian PP

ML bootstrap

mtDNA

nuclear exons

cyt-b

12S rRNA

GHR

vWF

RAG1

1

1.00

100

100

100

100

x

100

x

x

2

0.89

82

43

72

.

16

88

.

74

3

1.00

99

68

99

.

56

94

.

91

4

1.00

100

79

100

66

.

100

100

99

5

0.62

64

.

.

.

.

41

.

.

6

1.00

90

.

88

.

23

.

88

.

7

1.00

96

.

92

.

.

77

31

21

8

0.73

60

.

.

54

.

.

.

.

9

1.00

94

26

77

.

43

57

26

3

10

1.00

83

29

32

.

.

.

19

.

11

1.00

100

30

91

.

95

77

81

36

12

0.70

.

76

.

.

x

.

65

.

13

1.00

100

100

100

100

x

x

x

100

14

0.99

86

81

.

83

.

28

x

39

15

1.00

100

100

98

100

100

86

100

74

16

1.00

100

100

.

100

x

x

x

x

17

0.70

45

45

.

.

68

57

.

.

18

1.00

100

100

x

91

100

x

x

x

19

1.00

100

100

98

99

84

100

100

76

20

1.00

100

100

x

100

x

x

x

x

21

1.00

98

97

71

92

95

x

x

81

22

1.00

100

100

x

99

x

x

x

x

23

0.90

68

74

x

71

x

x

x

x

24

0.98

56

60

x

51

x

x

x

x

25

0.97

49

50

x

46

x

x

x

x

26

1.00

88

92

53

91

x

x

x

x

27

0.91

81

79

x

76

x

x

x

x

28

1.00

90

70

x

58

84

x

x

x

29

1.00

100

96

95

91

70

100

90

x

30

1.00

100

100

x

100

.

x

.

x

31

0.49

48

.

70

.

x

x

49

x

32

1.00

100

100

100

100

x

100

79

x

33

1.00

100

100

100

100

100

100

100

100

34

1.00

100

100

x

100

x

x

x

x

35

0.85

85

79

x

74

x

x

x

x

36

1.00

100

100

.

100

x

77

x

85

37

0.92

85

.

.

52

x

.

x

x

38

1.00

97

97

82

98

x

x

x

99

39

0.87

57

72

x

63

x

x

x

x

40

1.00

100

100

100

98

100

100

97

97

41

1.00

68

75

.

91

.

.

.

.

42

1.00

100

100

95

99

100

98

x

76

43

0.95

71

79

x

82

x

x

x

x

44

1.00

86

89

.

89

x

94

x

.

45

0.94

74

71

.

74

x

x

x

x

46

1.00

100

100

.

100

x

x

x

x

47

1.00

100

100

x

99

99

x

x

x

48

0.93

84

90

x

91

x

x

x

x

49

1.00

72

77

x

77

x

x

x

x

  1. All values are maximum-likelihood (ML) bootstraps except for the Bayesian posterior probability (PP) listed for the 5-gene data set. Boldface values indicate ML bootstrap > 75 or a Bayesian PP > 0.95. Values denoted as “.” indicate a node not recovered despite all subtending taxa being sampled; those denoted “x” indicate an absent node due to unsampled taxa.