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Table 2 Genomic distribution and diversity index of 1,105 polymorphic SNP markers in a set of 200 wild emmer wheat accessions from Israel and Turkey

From: SNP-revealed genetic diversity in wild emmer wheat correlates with ecological factors

Chromosome

No. of SNP markers

No. of polymorphic markers

Gene diversity

PIC

A genome

 

1A

114

98 (85.96%)

0.1498*

0.1271*

2A

98

84 (85.71%)

0.1823

0.1507

3A

98

78 (79.59%)

0.2024*

0.1651*

4A

124

102 (82.26%)

0.1721

0.1440

5A

85

66 (77.65%)

0.1555*

0.1304*

6A

125

90 (72.00%)

0.1909*

0.1562*

7A

135

101 (74.81%)

0.1595

0.1315*

Subtotal/Mean

769

613 (79.71%)

0.1733

0.1443

B genome

 

1B

100

88 (88.00%)

0.2140

0.1768

2B

88

71 (80.68%)

0.1995

0.1661

3B

67

55 (82.09%)

0.1879

0.1589

4B

75

60 (80.00%)

0.1733*

0.1466*

5B

76

57 (75.00%)

0.1498*

0.1273*

6B

105

90 (85.71%)

0.2253*

0.1880*

7B

102

79 (77.45%)

0.1897

0.1560

Subtotal/Mean

602

492 (81.73%)

0.1975

0.1649

Hemoeologous

 

1

214

186 (86.92%)

0.1797

0.1505

2

186

155 (83.33%)

0.1915

0.1572

3

165

133 (80.61%)

0.1966*

0.1622*

4

199

162 (81.41%)

0.1720*

0.1454

5

161

123 (76.40%)

0.1531*

0.1292*

6

230

180 (78.26%)

0.2079*

0.1731*

7

237

180 (75.95%)

0.1724

0.1432*

Total/Grand mean

1371

1105 (80.60%)

0.1841

0.1530

  1. * Means that is outside of the 95% bootstrap confidence interval of the genome mean.