From: Transcriptional abundance is not the single force driving the evolution of bacterial proteins
Organism | Abbreviation | Codon usage separation (CUS) | GC content | Generation times [29] |
---|---|---|---|---|
Acinetobacter ADP1 | Abay | 0.845 | 40.4 | 0.5 |
Bacillus subtilis 168 | Bsub | 0.869 | 43.5 | 0.43 |
Bacteroides thetaiotaomicron VPI-5482 | Bthe | 0.291 | 42.8 | 1.47 |
Caulobacter crescentus NA1000 | Ccre | 0.754 | 67.2 | 1.5 |
Escherichia coli K-12 | Ecol | 0.879 | 50.8 | 0.35 |
Francisella novicida U112 | Fnov | 0.339 | 32.5 | 3 |
Haemophilus influenzae Rd KW20 | Hinf | 0.877 | 38.2 | 0.5 |
Helicobacter pylori 26695 | Hpyl | 0.148 | 38.9 | 2.4 |
Mycoplasma genitalium G37 | Mgen | 0.529 | 31.7 | 12 |
Mycoplasma pulmonis UAB CTIP | Mpul | 0.032 | 26.6 | 1.5 |
Mycobacterium tuberculosis H37Rv | Mtub | 0.246 | 65.6 | 19 |
Porphyromonas gingivalis ATCC 33277 | Pgin | 0.800 | 48.4 | 2.7 |
Pseudomonas aeruginosa UCBPP-PA14 | Paer | 0.915 | 66.3 | 0.5 |
Staphylococcus aureus NCTC 8325 | Saur | 0.807 | 32.8 | 0.4 |
Streptococcus pneumoniae TIGR4 | Spne | 0.893 | 39.7 | 0.5 |
Streptococcus sanguinis SK36 | Ssan | 0.962 | 43.4 | - |
Salmonella typhimurium LT2 | Styp | 0.915 | 52.2 | 0.4 |
Vibrio cholera O1 biovar El Tor N16961 | Vcho | 0.897 | 47.4 | 0.2 |