Skip to main content

Table 2 Bacterial species investigated in this study

From: Transcriptional abundance is not the single force driving the evolution of bacterial proteins

Organism

Abbreviation

Codon usage separation (CUS)

GC content

Generation times [29]

Acinetobacter ADP1

Abay

0.845

40.4

0.5

Bacillus subtilis 168

Bsub

0.869

43.5

0.43

Bacteroides thetaiotaomicron VPI-5482

Bthe

0.291

42.8

1.47

Caulobacter crescentus NA1000

Ccre

0.754

67.2

1.5

Escherichia coli K-12

Ecol

0.879

50.8

0.35

Francisella novicida U112

Fnov

0.339

32.5

3

Haemophilus influenzae Rd KW20

Hinf

0.877

38.2

0.5

Helicobacter pylori 26695

Hpyl

0.148

38.9

2.4

Mycoplasma genitalium G37

Mgen

0.529

31.7

12

Mycoplasma pulmonis UAB CTIP

Mpul

0.032

26.6

1.5

Mycobacterium tuberculosis H37Rv

Mtub

0.246

65.6

19

Porphyromonas gingivalis ATCC 33277

Pgin

0.800

48.4

2.7

Pseudomonas aeruginosa UCBPP-PA14

Paer

0.915

66.3

0.5

Staphylococcus aureus NCTC 8325

Saur

0.807

32.8

0.4

Streptococcus pneumoniae TIGR4

Spne

0.893

39.7

0.5

Streptococcus sanguinis SK36

Ssan

0.962

43.4

-

Salmonella typhimurium LT2

Styp

0.915

52.2

0.4

Vibrio cholera O1 biovar El Tor N16961

Vcho

0.897

47.4

0.2