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Table 3 Summary of the DNA divergence values for Trinidad and Mexico populations of (a) Colletotrichum gloeosporioides sensu lato and (b) C. truncatum

From: Genetic structure and demographic history of Colletotrichum gloeosporioides sensu lato and C. truncatum isolates from Trinidad and Mexico

 

ACT

GPDH

β-TUB

ITS

 

Trinidad

Mexico

Trinidad

Mexico

Trinidad

Mexico

Trinidad

Mexico

(a)

# polymorphic sites, S

54

42

35

94

5

38

58

25

Total # mutations, Eta

60

44

38

12

5

40

58

26

Theta (per site), S

0.109

0.085

0.062

0.288

0.004

0.039

0.033

0.015

Theta (per site), Eta

0.109

0.085

0.063

0.278

0.004

0.040

0.032

0.016

Theta (per site), Pi

0.044

0.079

0.036

0.206

0.009

0.039

0.012

0.015

Theta-W (per site)

0.087

0.074

0.054

0.178

0.004

0.037

0.031

0.015

Theta-W (per sequence)

13.631

11.839

8.912

26.496

1.273

10.711

14.769

7.047

Conservation threshold, CT

0.52

0.580

0.45

0.38

0.99

0.91

0.92

0.92

Ave. # nucleotide differences, k

6.49

11.168

4.778

24.111

2.557

10.063

5.414

7.132

Nucleotide diversity, Pi

0.042

0.072

0.035

0.162

0.009

0.037

0.011

0.015

Nucleotide diversity, Pi(JC)

0.045

0.081

0.036

0.221

0.009

0.039

0.012

0.016

Pairwise comparisons

        

Ave # nucleotide differences, KT

8.833

13.432

6.541

6.366

Total nucleotide diversity, PiT

0.057

0.091

0.023

0.013

(b)

# polymorphic sites, S

4

6

0

1

0

10

0

3

Total # mutations, Eta

4

6

0

1

0

10

0

3

Theta (per site), S

0.008

0.009

0.000

0.002

0.000

0.016

0.000

0.002

Theta (per site), Eta

0.008

0.009

0.000

0.002

0.000

0.016

0.000

0.002

Theta (per site), Pi

0.012

0.006

0.000

0.002

0.000

0.009

0.000

0.001

Theta-W (per site)

0.008

0.009

0.000

0.002

0.000

0.016

0.000

0.002

Theta-W (per sequence)

1.543

2.121

0.000

0.353

0.000

3.535

0.000

1.060

Conservation threshold, CT

0.710

0.770

0.670

0.670

0.960

0.970

0.930

0.930

Ave. # nucleotide differences, k

2.286

0.2

0.000

0.356

0.000

1.800

0.000

0.756

Nucleotide diversity, Pi

0.012

0.001

0.000

0.002

0.000

0.013

0.000

0.002

Nucleotide diversity, Pi(JC)

0.012

0.001

0.000

0.002

0.000

0.014

0.000

0.002

Pairwise comparisons

        

Ave # nucleotide differences, KT

5.758

0.209

36.765

1.268

Total nucleotide diversity, PiT

0.029

0.001

0.272

0.003