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Table 3 Recombination test using the RDP program

From: Evolution by selection, recombination, and gene duplication in MHC class I genes of two Rhacophoridae species

 

Recombinant sequence

Nucleotide breakpoint

Potential parental sequences

Methods

1

Rhom16

239

Rhom13/Unknown(Rhom17)

GENECONV, BootScan, MaxChi, Chimaera, Siscan, 3Seq

2

Pome06

239

Rhom15/Rhom18

GENECONV, BootScan, MaxChi, Chimaera, Siscan, 3Seq

3

Rhom17

141

Rhom12/Unknown(Rhom05)

GENECONV, MaxChi, Chimaera, Siscan, 3Seq

4

Pome04

334

Rhom10/Unknown(Rhom12)

MaxChi, Chimaera, Siscan, 3Seq

5

Rhom08

229

Rhom15/Rhom18

RDP, GENECONV, BootScan, MaxChi, Chimaera, Siscan, 3Seq